Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACCH06_RS13045 Genome accession   NZ_CP174157
Coordinates   2638383..2639150 (-) Length   255 a.a.
NCBI ID   WP_088117596.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2633383..2644150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS13025 - 2633541..2634353 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  ACCH06_RS13030 ccpN 2634379..2635017 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  ACCH06_RS13035 glyS 2635165..2637204 (-) 2040 WP_258729523.1 glycine--tRNA ligase subunit beta -
  ACCH06_RS13040 glyQ 2637197..2638084 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  ACCH06_RS13045 recO 2638383..2639150 (-) 768 WP_088117596.1 DNA repair protein RecO Machinery gene
  ACCH06_RS13050 - 2639187..2639330 (-) 144 WP_004429487.1 YqzL family protein -
  ACCH06_RS13055 era 2639487..2640392 (-) 906 WP_004429485.1 GTPase Era -
  ACCH06_RS13060 - 2640373..2640783 (-) 411 WP_010789236.1 cytidine deaminase -
  ACCH06_RS13065 - 2640897..2641274 (-) 378 WP_258729525.1 diacylglycerol kinase family protein -
  ACCH06_RS13070 ybeY 2641255..2641728 (-) 474 WP_258729526.1 rRNA maturation RNase YbeY -
  ACCH06_RS13075 - 2641729..2643864 (-) 2136 WP_004429478.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=1074686 ACCH06_RS13045 WP_088117596.1 2638383..2639150(-) (recO) [Bacillus atrophaeus strain SHZ-24]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1074686 ACCH06_RS13045 WP_088117596.1 2638383..2639150(-) (recO) [Bacillus atrophaeus strain SHZ-24]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAAAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGTTTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATTTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAGGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.941

100

0.929

Multiple sequence alignment