Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACCH06_RS12520 Genome accession   NZ_CP174157
Coordinates   2547697..2548494 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542697..2553494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS12495 - 2543130..2543873 (-) 744 WP_406589033.1 glycerophosphodiester phosphodiesterase -
  ACCH06_RS12500 - 2543985..2544608 (-) 624 WP_258729477.1 N-acetylmuramoyl-L-alanine amidase -
  ACCH06_RS12505 - 2544631..2544933 (-) 303 WP_003325487.1 hypothetical protein -
  ACCH06_RS12510 - 2545389..2546507 (+) 1119 WP_406589034.1 NADH-dependent flavin oxidoreductase -
  ACCH06_RS12515 - 2546672..2547529 (+) 858 WP_003325485.1 manganese catalase family protein -
  ACCH06_RS12520 spo0A 2547697..2548494 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  ACCH06_RS12525 spoIVB 2548776..2550056 (-) 1281 WP_258729479.1 SpoIVB peptidase -
  ACCH06_RS12530 recN 2550250..2551980 (-) 1731 WP_406589035.1 DNA repair protein RecN Machinery gene
  ACCH06_RS12535 argR 2552015..2552464 (-) 450 WP_003325480.1 arginine repressor ArgR -
  ACCH06_RS12540 - 2552563..2553408 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=1074675 ACCH06_RS12520 WP_010789174.1 2547697..2548494(-) (spo0A) [Bacillus atrophaeus strain SHZ-24]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1074675 ACCH06_RS12520 WP_010789174.1 2547697..2548494(-) (spo0A) [Bacillus atrophaeus strain SHZ-24]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGTCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGTGTGGCTTATAATGGCCAGGAATGCCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATAAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCGCATATCAAAGGATATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAGTT
GCTCGGCAGCATCACGAAAGTGCTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974

Multiple sequence alignment