Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACCH06_RS11465 Genome accession   NZ_CP174157
Coordinates   2356237..2356845 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2351237..2361845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS11425 - 2352349..2352855 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  ACCH06_RS11430 - 2352999..2353418 (+) 420 WP_010789024.1 Hsp20/alpha crystallin family protein -
  ACCH06_RS11435 - 2353438..2353827 (-) 390 WP_406590198.1 YppG family protein -
  ACCH06_RS11440 - 2354017..2354205 (+) 189 WP_035175493.1 YppF family protein -
  ACCH06_RS11445 - 2354239..2354613 (-) 375 WP_406588981.1 YppE family protein -
  ACCH06_RS11450 - 2354655..2354900 (-) 246 WP_061670114.1 DUF5446 family protein -
  ACCH06_RS11455 sspM 2355101..2355205 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  ACCH06_RS11460 - 2355232..2356194 (-) 963 WP_406588982.1 DUF2515 domain-containing protein -
  ACCH06_RS11465 recU 2356237..2356845 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  ACCH06_RS11470 - 2356883..2359636 (+) 2754 WP_406588983.1 PBP1A family penicillin-binding protein -
  ACCH06_RS11475 - 2359728..2360219 (-) 492 WP_258729404.1 YpoC family protein -
  ACCH06_RS11480 nth 2360216..2360875 (-) 660 WP_326251999.1 endonuclease III -
  ACCH06_RS11485 dnaD 2360894..2361592 (-) 699 WP_035175190.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=1074674 ACCH06_RS11465 WP_010789030.1 2356237..2356845(+) (recU) [Bacillus atrophaeus strain SHZ-24]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1074674 ACCH06_RS11465 WP_010789030.1 2356237..2356845(+) (recU) [Bacillus atrophaeus strain SHZ-24]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAGAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAACAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901

Multiple sequence alignment