Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACCH06_RS08080 Genome accession   NZ_CP174157
Coordinates   1599093..1599371 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594093..1604371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS08060 - 1595288..1596202 (+) 915 WP_406590023.1 ketopantoate reductase family protein -
  ACCH06_RS08065 - 1596233..1597465 (-) 1233 WP_406590024.1 aminopeptidase -
  ACCH06_RS08070 - 1597567..1597701 (-) 135 WP_010788482.1 protein YkpC -
  ACCH06_RS08075 mreBH 1597803..1598810 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  ACCH06_RS08080 abrB 1599093..1599371 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  ACCH06_RS08085 - 1599584..1600870 (+) 1287 WP_003329145.1 ATP-binding protein -
  ACCH06_RS08090 - 1600883..1601722 (+) 840 WP_406590025.1 gamma-glutamylcyclotransferase -
  ACCH06_RS08095 ktrC 1601772..1602437 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  ACCH06_RS08100 ade 1602607..1604334 (+) 1728 WP_258729149.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=1074669 ACCH06_RS08080 WP_003329146.1 1599093..1599371(+) (abrB) [Bacillus atrophaeus strain SHZ-24]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1074669 ACCH06_RS08080 WP_003329146.1 1599093..1599371(+) (abrB) [Bacillus atrophaeus strain SHZ-24]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment