Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACCH06_RS07850 Genome accession   NZ_CP174157
Coordinates   1557399..1557863 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552399..1562863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS07830 - 1552846..1554666 (+) 1821 WP_258729124.1 PAS domain-containing protein -
  ACCH06_RS07835 - 1554689..1555858 (-) 1170 WP_088117074.1 aminotransferase A -
  ACCH06_RS07840 - 1556064..1556225 (-) 162 WP_003327276.1 hypothetical protein -
  ACCH06_RS07845 cheV 1556434..1557345 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  ACCH06_RS07850 kre 1557399..1557863 (-) 465 WP_003327274.1 YkyB family protein Regulator
  ACCH06_RS07855 - 1557986..1559281 (-) 1296 WP_406590013.1 MFS transporter -
  ACCH06_RS07860 - 1559357..1559854 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  ACCH06_RS07865 - 1559990..1560850 (-) 861 WP_258729127.1 metallophosphoesterase -
  ACCH06_RS07870 fadH 1560997..1561761 (+) 765 WP_258729128.1 2,4-dienoyl-CoA reductase -
  ACCH06_RS07875 - 1561846..1561978 (+) 133 Protein_1500 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=1074667 ACCH06_RS07850 WP_003327274.1 1557399..1557863(-) (kre) [Bacillus atrophaeus strain SHZ-24]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1074667 ACCH06_RS07850 WP_003327274.1 1557399..1557863(-) (kre) [Bacillus atrophaeus strain SHZ-24]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942

Multiple sequence alignment