Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ACCH06_RS06165 Genome accession   NZ_CP174157
Coordinates   1260988..1261941 (+) Length   317 a.a.
NCBI ID   WP_010788227.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255988..1266941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS06140 argF 1257788..1258758 (+) 971 Protein_1154 ornithine carbamoyltransferase -
  ACCH06_RS06145 - 1258840..1259019 (+) 180 WP_003327605.1 YjzC family protein -
  ACCH06_RS06150 - 1259048..1259236 (-) 189 WP_003327604.1 YjzD family protein -
  ACCH06_RS06155 - 1259496..1260230 (+) 735 WP_063637420.1 hypothetical protein -
  ACCH06_RS06160 - 1260323..1260898 (+) 576 WP_258729796.1 hypothetical protein -
  ACCH06_RS06165 med 1260988..1261941 (+) 954 WP_010788227.1 BMP family ABC transporter substrate-binding protein Regulator
  ACCH06_RS06170 comZ 1261956..1262147 (+) 192 WP_010788228.1 ComZ family protein Regulator
  ACCH06_RS06175 - 1262177..1262404 (-) 228 WP_003327598.1 hypothetical protein -
  ACCH06_RS06180 fabH 1262576..1263514 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  ACCH06_RS06185 fabF 1263536..1264774 (+) 1239 WP_003327596.1 beta-ketoacyl-ACP synthase II -
  ACCH06_RS06190 - 1264852..1265637 (+) 786 WP_406589877.1 DUF2268 domain-containing protein -
  ACCH06_RS06195 - 1265829..1266815 (+) 987 WP_010788232.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35410.91 Da        Isoelectric Point: 4.4404

>NTDB_id=1074657 ACCH06_RS06165 WP_010788227.1 1260988..1261941(+) (med) [Bacillus atrophaeus strain SHZ-24]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGINLLFGHGSEYEEMFNLVSEDYPDMEFVISNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYGIIAEQYSNGILESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNRTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1074657 ACCH06_RS06165 WP_010788227.1 1260988..1261941(+) (med) [Bacillus atrophaeus strain SHZ-24]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACAATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTACTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCACAAGAGAGGGATAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCGGACATGGAATTTGTCATTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAATGGAGAAGCGA
TGGGGTTTTTCGGCGGGATGACAGCCGCACATATGTCCAAAACCAATCAAATCGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAGTATGAAAATCCGGACATCACTATCAATACGAAATATACAGACCACTG
GGATGACGATACCACAGCCGTGAAGCTTTATGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTCACAGACCAGTCTGATCTG
GGCGAAAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAACGG
CATTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTAGTTGACA
AAGCCTTCCAAGATAAAATTGCCGCTCTTATCAAAACGTATAATCGAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

87.382

100

0.874

Multiple sequence alignment