Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACCH06_RS01930 Genome accession   NZ_CP174157
Coordinates   375794..376231 (-) Length   145 a.a.
NCBI ID   WP_088116478.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370794..381231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS01900 - 370884..372020 (+) 1137 WP_406589596.1 zinc-dependent alcohol dehydrogenase -
  ACCH06_RS01905 - 372033..372488 (+) 456 WP_258728584.1 RDD family protein -
  ACCH06_RS01910 - 372573..372902 (+) 330 WP_258728585.1 YckD family protein -
  ACCH06_RS01915 - 373106..373834 (+) 729 WP_063638715.1 AAA family ATPase -
  ACCH06_RS01920 - 373904..375340 (+) 1437 WP_406589597.1 glycoside hydrolase family 1 protein -
  ACCH06_RS01925 nin/comJ 375365..375775 (-) 411 WP_406589598.1 competence protein ComJ Regulator
  ACCH06_RS01930 nucA/comI 375794..376231 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACCH06_RS01935 - 376453..378156 (-) 1704 WP_258728588.1 methyl-accepting chemotaxis protein -
  ACCH06_RS01940 hxlB 378284..378841 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  ACCH06_RS01945 hxlA 378848..379480 (-) 633 WP_088116480.1 3-hexulose-6-phosphate synthase -
  ACCH06_RS01950 - 379699..380064 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16005.77 Da        Isoelectric Point: 4.1626

>NTDB_id=1074644 ACCH06_RS01930 WP_088116478.1 375794..376231(-) (nucA/comI) [Bacillus atrophaeus strain SHZ-24]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1074644 ACCH06_RS01930 WP_088116478.1 375794..376231(-) (nucA/comI) [Bacillus atrophaeus strain SHZ-24]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

82.639

99.31

0.821

Multiple sequence alignment