Detailed information NTG1074640

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACCH06_RS00575
• Genome accession: NZ_CP174157
• Coordinates: 103540..105978 (+)
• Length: 812 a.a.
• NCBI ID: WP_003328317.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain SHZ-24
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 98540..110978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCH06_RS00560	ctsR	101417..101881 (+)	465	WP_003328320.1	transcriptional regulator CtsR	-
ACCH06_RS00565	-	101895..102452 (+)	558	WP_406589526.1	UvrB/UvrC motif-containing protein	-
ACCH06_RS00570	-	102452..103543 (+)	1092	WP_010787416.1	protein arginine kinase	-
ACCH06_RS00575	clpC	103540..105978 (+)	2439	WP_003328317.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
ACCH06_RS00580	radA	106063..107442 (+)	1380	WP_106048265.1	DNA repair protein RadA	Machinery gene
ACCH06_RS00585	disA	107446..108528 (+)	1083	WP_010787418.1	DNA integrity scanning diadenylate cyclase DisA	-
ACCH06_RS00590	-	108649..109749 (+)	1101	WP_406589527.1	PIN/TRAM domain-containing protein	-
ACCH06_RS00595	ispD	109763..110461 (+)	699	WP_268508188.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACCH06_RS00600	ispF	110454..110930 (+)	477	WP_258729879.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 812 a.a.
• Molecular weight: 90364.87 Da
• Isoelectric Point: 5.9519

>NTDB_id=1074640 ACCH06_RS00575 WP_003328317.1 103540..105978(+) (clpC) [Bacillus atrophaeus strain SHZ-24]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSVDESVQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVV
SSWTGVPVSKIAQTETDKLLNMENLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLN
EIVTLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDGE
FVVKTTAKTNNL

Nucleotide

• Length: 2439 bp

>NTDB_id=1074640 ACCH06_RS00575 WP_003328317.1 103540..105978(+) (clpC) [Bacillus atrophaeus strain SHZ-24]
ATGATGTTTGGAAGATTTACAGAGCGCGCGCAAAAGGTATTGGCACTTGCACAGGAGGAAGCACTTCGTTTAGGGCATAA
CAATATTGGCACAGAGCACATTTTATTAGGACTGGTACGCGAAGGAGAAGGTATTGCAGCTAAAGCGCTTCAAGCACTTG
GTCTCGGTTCTGATAAAATCCAAAAAGAAGTGGAGAGCTTAATTGGACGCGGACAAGAAATGTCCCAAACCATTCATTAT
ACTCCGAGAGCTAAAAAAGTGATTGAGCTTTCAATGGATGAGGCAAGAAAACTTGGTCATTCTTACGTAGGGACAGAACA
TATCCTTCTCGGACTCATACGCGAAGGAGAAGGTGTGGCAGCGAGAGTGCTGAATAACCTTGGCGTAAGTTTAAATAAAG
CGAGACAGCAGGTTCTCCAGCTTCTCGGAAGCAATGAAACAGGATCTTCTGCCTCAGGAACAAACAGCAATGCAAATACT
CCGACGCTTGACAGCTTGGCGAGAGATTTAACGGCGATAGCGAAGGAAGACAGCCTTGATCCGGTTATCGGCAGAAGCAA
GGAAATTCAGCGGGTAATTGAAGTGCTGAGCCGCAGAACGAAAAACAATCCTGTGCTTATCGGAGAACCGGGTGTAGGGA
AAACGGCTATTGCTGAAGGGCTTGCACAGCAAATCATCAACAATGAAGTTCCTGAAATCTTGCGCGATAAACGTGTTATG
ACATTAGACATGGGAACGGTCGTTGCCGGCACAAAGTACCGTGGTGAATTTGAAGACCGTTTGAAAAAGGTAATGGATGA
AATTCGTCAAGCAGGCAATATTATTCTCTTTATTGATGAGCTTCATACACTAATAGGGGCAGGCGGAGCAGAAGGTGCGA
TTGATGCATCAAATATTTTAAAGCCGTCACTTGCCCGCGGAGAGCTGCAATGCATCGGGGCGACTACTCTTGATGAGTAC
CGCAAATATATTGAAAAAGATGCAGCGCTTGAGCGCCGATTCCAACCAATCCAGGTTGATCAGCCTTCTGTAGACGAAAG
CGTTCAAATATTAAGAGGGTTACGTGACCGGTATGAAGCGCATCACCGGGTTTCAATTACTGATGAAGCCATTGAAGCTG
CGGTTAAGCTTTCTGACCGATATATTTCTGATCGGTTCCTTCCGGATAAAGCAATTGATTTGATTGATGAAGCAGGTTCT
AAAGTAAGATTGCGTTCATTTACAACTCCACCAAATTTGAAGGAGCTTGAACAAAAACTTGATGAAGTCCGTAAAGAAAA
AGATGCAGCGGTGCAAAGCCAAGAGTTTGAAAAAGCCGCCTCATTACGCGATACAGAACAGCGTTTAAGAGAACAAGTGG
AAGATACGAAGAAAACGTGGAAAGAGAAACAAGGCCAGGAAAATTCAGAAGTATCGGTTGAAGATATCGCAATGGTTGTT
TCAAGTTGGACCGGGGTTCCTGTTTCTAAAATTGCGCAAACTGAAACGGATAAGCTGCTGAATATGGAAAATCTCCTTCA
TTCCCGTGTTATCGGGCAGGATGAAGCCGTTGTAGCTGTTGCTAAGGCTGTCAGACGCGCGAGAGCAGGGTTGAAAGACC
CGAAACGGCCGATTGGTTCATTCGTATTCTTAGGCCCTACAGGTGTAGGGAAAACCGAGCTTGCAAGAGCACTTGCTGAA
TCCATTTTCGGTGATGAAGAAGCGATGATCAGAATCGATATGTCAGAATACATGGAGAAACACTCGACATCAAGACTTGT
CGGTTCACCTCCTGGATATGTCGGTTATGATGAAGGCGGTCAGTTAACAGAAAAAGTTAGAAGAAAACCATACTCTGTTG
TGCTGCTTGATGAAATTGAAAAAGCGCATCCGGATGTATTCAATATTCTTTTACAAGTGCTTGAAGATGGCCGTCTGACT
GATTCGAAGGGACGCACAGTTGATTTCCGCAATACAATTCTTATCATGACGTCGAACGTCGGAGCCAGCGAGCTGAAACG
CAATAAGTACGTTGGTTTTAATGTTCAGGATGAGACTCAAAATCACAAAGACATGAAAGATAAAGTAATGGGTGAGCTGA
AACGGGCATTCAGACCGGAGTTTATCAACCGTATTGATGAAATCATTGTATTCCACTCACTCGAGAAGAAACATCTGAAT
GAAATTGTGACACTTATGTCGGATCAATTAACAAAACGCCTAAAAGAACAAGACCTATCAATTGAGCTGACAGAAGCTGC
AAAAGCGAAAGTAGCTGATGAAGGGGTAGATCTGGAGTACGGCGCCCGTCCGTTAAGAAGAGCAATTCAAAAGCATGTAG
AAGACCGTTTATCAGAGGAACTGCTTAGAGGAAATATTGATAAAGGTCAGCATATTGTGCTTGATGTTGAAGATGGAGAG
TTTGTCGTAAAAACGACAGCTAAAACGAATAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (536-708)

• AAA lid domain (AAA_lid_9) (343-444)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-317)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (93-143)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (714-793)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	98.025	99.754	0.978
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.625	98.522	0.489
clpC	Streptococcus thermophilus LMD-9	46.481	100	0.472
clpC	Streptococcus thermophilus LMG 18311	46.238	100	0.469
clpC	Streptococcus pneumoniae Rx1	45.365	99.631	0.452
clpC	Streptococcus pneumoniae D39	45.365	99.631	0.452
clpC	Streptococcus pneumoniae TIGR4	45.241	99.631	0.451
clpC	Streptococcus mutans UA159	43.826	100	0.446
clpE	Streptococcus mutans UA159	53.005	79.926	0.424
clpC	Lactococcus lactis subsp. cremoris KW2	50	84.729	0.424
clpE	Streptococcus pneumoniae TIGR4	52.234	79.926	0.417
clpE	Streptococcus pneumoniae Rx1	52.234	79.926	0.417
clpE	Streptococcus pneumoniae D39	52.234	79.926	0.417
clpE	Streptococcus pneumoniae R6	52.234	79.926	0.417