Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACCH06_RS00245 Genome accession   NZ_CP174157
Coordinates   44597..44887 (-) Length   96 a.a.
NCBI ID   WP_088116342.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39597..49887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS00205 darA 39615..39944 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  ACCH06_RS00210 - 39957..40397 (+) 441 WP_003328605.1 YaaR family protein -
  ACCH06_RS00215 holB 40409..41398 (+) 990 WP_010787388.1 DNA polymerase III subunit delta' -
  ACCH06_RS00220 ricT 41401..42228 (+) 828 WP_061571110.1 competence/sporulation regulator complex protein RicT -
  ACCH06_RS00225 yabA 42243..42602 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  ACCH06_RS00230 - 42663..43406 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACCH06_RS00235 - 43393..43692 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  ACCH06_RS00240 rsmI 43667..44545 (+) 879 WP_258728480.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACCH06_RS00245 abrB 44597..44887 (-) 291 WP_088116342.1 transition state genes transcriptional regulator AbrB Regulator
  ACCH06_RS00250 metG 45374..47368 (+) 1995 WP_258728481.1 methionine--tRNA ligase -
  ACCH06_RS00255 - 47447..48214 (+) 768 WP_010787391.1 TatD family hydrolase -
  ACCH06_RS00260 - 48372..49697 (+) 1326 WP_258728482.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10858.67 Da        Isoelectric Point: 6.3482

>NTDB_id=1074639 ACCH06_RS00245 WP_088116342.1 44597..44887(-) (abrB) [Bacillus atrophaeus strain SHZ-24]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1074639 ACCH06_RS00245 WP_088116342.1 44597..44887(-) (abrB) [Bacillus atrophaeus strain SHZ-24]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948

Multiple sequence alignment