Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACJED3_RS21320 Genome accession   NZ_CP174155
Coordinates   4001732..4002535 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3996732..4007535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS21300 yqxC 3996842..3997687 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  ACJED3_RS21305 argR 3997785..3998234 (+) 450 WP_003230265.1 arginine repressor ArgR -
  ACJED3_RS21310 recN 3998271..4000001 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  ACJED3_RS21315 spoIVB 4000176..4001456 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  ACJED3_RS21320 spo0A 4001732..4002535 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACJED3_RS21325 yqiG 4003000..4004118 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ACJED3_RS21330 - 4004191..4004343 (-) 153 WP_014480226.1 hypothetical protein -
  ACJED3_RS21335 - 4004651..4004947 (+) 297 WP_014480225.1 hypothetical protein -
  ACJED3_RS21340 yqiI 4004967..4005587 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  ACJED3_RS21345 glpQB 4005666..4006397 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1074636 ACJED3_RS21320 WP_003226427.1 4001732..4002535(+) (spo0A) [Bacillus subtilis strain G01]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1074636 ACJED3_RS21320 WP_003226427.1 4001732..4002535(+) (spo0A) [Bacillus subtilis strain G01]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment