Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACJED3_RS20785 Genome accession   NZ_CP174155
Coordinates   3910299..3911066 (+) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3905299..3916066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS20755 pgpH 3905595..3907730 (+) 2136 WP_014480296.1 cyclic-di-AMP phosphodiesterase PgpH -
  ACJED3_RS20760 ybeY 3907731..3908204 (+) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  ACJED3_RS20765 unpK 3908185..3908556 (+) 372 WP_014480294.1 diacylglycerol kinase family protein -
  ACJED3_RS20770 - 3908675..3909085 (+) 411 WP_014480293.1 cytidine deaminase -
  ACJED3_RS20775 era 3909066..3909971 (+) 906 WP_003230051.1 GTPase Era -
  ACJED3_RS20780 yqzL 3910119..3910262 (+) 144 WP_003230053.1 YqzL family protein -
  ACJED3_RS20785 recO 3910299..3911066 (+) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  ACJED3_RS20790 glyQ 3911363..3912250 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACJED3_RS20795 glyS 3912243..3914282 (+) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  ACJED3_RS20800 ccpN 3914415..3915053 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACJED3_RS20805 ppsR 3915079..3915891 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1074625 ACJED3_RS20785 WP_014480292.1 3910299..3911066(+) (recO) [Bacillus subtilis strain G01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1074625 ACJED3_RS20785 WP_014480292.1 3910299..3911066(+) (recO) [Bacillus subtilis strain G01]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment