Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACJED3_RS11595 Genome accession   NZ_CP174155
Coordinates   2170889..2171179 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain G01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2165889..2176179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS11580 yabE 2166084..2167397 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  ACJED3_RS11585 dayD 2167553..2168320 (-) 768 WP_014478595.1 TatD family hydrolase -
  ACJED3_RS11590 metG 2168400..2170394 (-) 1995 WP_014478594.1 methionine--tRNA ligase -
  ACJED3_RS11595 abrB 2170889..2171179 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ACJED3_RS11600 rsmI 2171228..2172106 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACJED3_RS11605 yazA 2172081..2172380 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ACJED3_RS11610 trmNF 2172367..2173110 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACJED3_RS11615 yabA 2173169..2173528 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ACJED3_RS11620 ricT 2173543..2174370 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  ACJED3_RS11625 holB 2174373..2175362 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  ACJED3_RS11630 yaaR 2175374..2175814 (-) 441 WP_009966249.1 YaaR family protein -
  ACJED3_RS11635 darA 2175827..2176156 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=1074592 ACJED3_RS11595 WP_003226760.1 2170889..2171179(+) (abrB) [Bacillus subtilis strain G01]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1074592 ACJED3_RS11595 WP_003226760.1 2170889..2171179(+) (abrB) [Bacillus subtilis strain G01]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment