Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACJED3_RS06000 Genome accession   NZ_CP174155
Coordinates   1094786..1095364 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain G01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089786..1100364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS05965 lepB 1089793..1090299 (-) 507 WP_003233128.1 signal peptidase I -
  ACJED3_RS05970 yhjE 1090301..1090924 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  ACJED3_RS05975 - 1091076..1091447 (+) 372 WP_014476361.1 hypothetical protein -
  ACJED3_RS05980 yhjC 1091646..1091846 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACJED3_RS05985 yhjB 1091843..1093312 (+) 1470 WP_014479374.1 sodium:solute symporter -
  ACJED3_RS05990 yhjA 1093356..1093625 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  ACJED3_RS05995 yhxD 1093842..1094741 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  ACJED3_RS06000 comK 1094786..1095364 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACJED3_RS06005 yhzC 1095657..1095890 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACJED3_RS06010 yhxC 1095918..1096775 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  ACJED3_RS06015 comW 1096879..1098407 (+) 1529 Protein_1198 FAD-dependent oxidoreductase -
  ACJED3_RS06020 - 1098462..1099088 (+) 627 Protein_1199 protoglobin domain-containing protein -
  ACJED3_RS06025 - 1099329..1099844 (+) 516 WP_326255844.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1074578 ACJED3_RS06000 WP_003245329.1 1094786..1095364(-) (comK) [Bacillus subtilis strain G01]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1074578 ACJED3_RS06000 WP_003245329.1 1094786..1095364(-) (comK) [Bacillus subtilis strain G01]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment