Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ACJED3_RS05605 Genome accession   NZ_CP174155
Coordinates   1014836..1015789 (-) Length   317 a.a.
NCBI ID   WP_014479436.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009836..1020789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS05575 appD 1009967..1010953 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ACJED3_RS05580 yjaZ 1011145..1011930 (-) 786 WP_014479439.1 DUF2268 domain-containing protein -
  ACJED3_RS05585 fabF 1012006..1013247 (-) 1242 WP_014479438.1 beta-ketoacyl-ACP synthase II -
  ACJED3_RS05590 fabH 1013270..1014208 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ACJED3_RS05595 yjzB 1014373..1014600 (+) 228 WP_031600361.1 spore coat protein YjzB -
  ACJED3_RS05600 comZ 1014630..1014821 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ACJED3_RS05605 med 1014836..1015789 (-) 954 WP_014479436.1 transcriptional regulator Med Regulator
  ACJED3_RS05610 - 1015880..1016437 (-) 558 WP_014479435.1 hypothetical protein -
  ACJED3_RS05615 - 1016519..1017253 (-) 735 WP_014479433.1 hypothetical protein -
  ACJED3_RS05620 yjzD 1017502..1017687 (+) 186 WP_003245236.1 YjzD family protein -
  ACJED3_RS05625 yjzC 1017733..1017912 (-) 180 WP_003245356.1 YjzC family protein -
  ACJED3_RS05630 - 1018090..1019240 (+) 1151 WP_087614160.1 IS3 family transposase -
  ACJED3_RS05635 argF 1019288..1020247 (-) 960 WP_014479432.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.88 Da        Isoelectric Point: 4.6652

>NTDB_id=1074575 ACJED3_RS05605 WP_014479436.1 1014836..1015789(-) (med) [Bacillus subtilis strain G01]
MITRLVMIFSVLLLLSGCGKTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1074575 ACJED3_RS05605 WP_014479436.1 1014836..1015789(-) (med) [Bacillus subtilis strain G01]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGAAAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994

Multiple sequence alignment