Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACJED3_RS03980 Genome accession   NZ_CP174155
Coordinates   728017..728481 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain G01     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 723017..733481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS03960 fadH 724205..724969 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  ACJED3_RS03965 ppeE 725112..725972 (+) 861 WP_003232400.1 metallophosphoesterase -
  ACJED3_RS03970 ltdD 726029..726523 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  ACJED3_RS03975 ykuC 726599..727891 (+) 1293 WP_014479656.1 MFS transporter -
  ACJED3_RS03980 kre 728017..728481 (+) 465 WP_003232406.1 YkyB family protein Regulator
  ACJED3_RS03985 cheV 728525..729436 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  ACJED3_RS03990 - 729640..729801 (+) 162 WP_003245246.1 hypothetical protein -
  ACJED3_RS03995 dapX 730003..731184 (+) 1182 WP_014479654.1 aminotransferase A -
  ACJED3_RS04000 kinA 731181..733010 (-) 1830 WP_014479653.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=1074566 ACJED3_RS03980 WP_003232406.1 728017..728481(+) (kre) [Bacillus subtilis strain G01]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1074566 ACJED3_RS03980 WP_003232406.1 728017..728481(+) (kre) [Bacillus subtilis strain G01]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment