Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACJED3_RS00450 Genome accession   NZ_CP174155
Coordinates   83113..83733 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain G01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78113..88733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS00430 dnaD 78404..79102 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ACJED3_RS00435 nth 79121..79780 (+) 660 WP_009967580.1 endonuclease III -
  ACJED3_RS00440 ypoC 79777..80271 (+) 495 WP_009967579.1 YpoC family protein -
  ACJED3_RS00445 ponA 80347..83091 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  ACJED3_RS00450 recU 83113..83733 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  ACJED3_RS00455 yppC 83774..84736 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  ACJED3_RS00460 sspM 84761..84865 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACJED3_RS00465 yppD 85064..85309 (+) 246 WP_004398488.1 YppD family protein -
  ACJED3_RS00470 yppE 85355..85726 (+) 372 WP_003246080.1 YppE family protein -
  ACJED3_RS00475 yppF 85765..85953 (-) 189 WP_003230690.1 YppF family protein -
  ACJED3_RS00480 sppG 86140..86517 (+) 378 WP_004398696.1 YppG family protein -
  ACJED3_RS00485 ypqA 86538..86957 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  ACJED3_RS00490 ptsA 87095..87601 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=1074559 ACJED3_RS00450 WP_014480105.1 83113..83733(-) (recU) [Bacillus subtilis strain G01]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1074559 ACJED3_RS00450 WP_014480105.1 83113..83733(-) (recU) [Bacillus subtilis strain G01]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment