Detailed information NTG0107455

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AABA74_RS17955
• Genome accession: NZ_AP028932
• Coordinates: 3604246..3605391 (+)
• Length: 381 a.a.
• NCBI ID: WP_017418708.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain RB.IBE29
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3599246..3610391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA74_RS17935 (RBIBE_34720)	-	3599720..3600436 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
AABA74_RS17940 (RBIBE_34730)	narK	3600534..3601724 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
AABA74_RS17945 (RBIBE_34740)	argS	3601859..3603529 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
AABA74_RS17950 (RBIBE_34750)	-	3603526..3603954 (-)	429	WP_003151069.1	DUF1934 family protein	-
AABA74_RS17955 (RBIBE_34760)	rapF	3604246..3605391 (+)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
AABA74_RS17960 (RBIBE_34770)	-	3605375..3605494 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
AABA74_RS17965 (RBIBE_34780)	speB	3605617..3606489 (-)	873	WP_058906421.1	agmatinase	-
AABA74_RS17970 (RBIBE_34790)	speE	3606549..3607379 (-)	831	WP_003151052.1	spermidine synthase	-
AABA74_RS17975 (RBIBE_34800)	-	3607579..3609651 (+)	2073	WP_058906422.1	transglycosylase domain-containing protein	-
AABA74_RS17980 (RBIBE_34810)	-	3609675..3610106 (-)	432	WP_043867516.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=107455 AABA74_RS17955 WP_017418708.1 3604246..3605391(+) (rapF) [Bacillus velezensis strain RB.IBE29]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=107455 AABA74_RS17955 WP_017418708.1 3604246..3605391(+) (rapF) [Bacillus velezensis strain RB.IBE29]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGCATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533