Detailed information NTG1074498

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACI8NS_RS18030
• Genome accession: NZ_CP174125
• Coordinates: 3634622..3635767 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain AX22
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3629622..3640767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI8NS_RS18005 (ACI8NS_18005)	-	3629905..3630338 (+)	434	Protein_3483	hypothetical protein	-
ACI8NS_RS18010 (ACI8NS_18010)	-	3630363..3632435 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
ACI8NS_RS18015 (ACI8NS_18015)	speE	3632635..3633465 (+)	831	WP_003151052.1	spermidine synthase	-
ACI8NS_RS18020 (ACI8NS_18020)	speB	3633524..3634396 (+)	873	WP_032875884.1	agmatinase	-
ACI8NS_RS18025 (ACI8NS_18025)	-	3634519..3634638 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACI8NS_RS18030 (ACI8NS_18030)	rapF	3634622..3635767 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
ACI8NS_RS18035 (ACI8NS_18035)	-	3635998..3637353 (+)	1356	WP_032875887.1	YncE family protein	-
ACI8NS_RS18040 (ACI8NS_18040)	-	3637393..3638769 (+)	1377	WP_032875890.1	YncE family protein	-
ACI8NS_RS18045 (ACI8NS_18045)	-	3638776..3639288 (-)	513	Protein_3491	bacteriocin biosynthesis protein AlbG	-
ACI8NS_RS18050 (ACI8NS_18050)	-	3639442..3639870 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=1074498 ACI8NS_RS18030 WP_074534220.1 3634622..3635767(-) (rapF) [Bacillus velezensis strain AX22]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1074498 ACI8NS_RS18030 WP_074534220.1 3634622..3635767(-) (rapF) [Bacillus velezensis strain AX22]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541