Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACIUZZ_RS14140 Genome accession   NZ_CP174122
Coordinates   3042037..3043398 (-) Length   453 a.a.
NCBI ID   WP_026395214.1    Uniprot ID   -
Organism   Acetobacterium dehalogenans DSM 11527     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3037037..3048398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIUZZ_RS14105 (ACIUZZ_14105) scfA 3037148..3037294 (-) 147 WP_083837856.1 six-cysteine ranthipeptide SCIFF -
  ACIUZZ_RS14110 (ACIUZZ_14110) yajC 3037389..3037769 (-) 381 WP_035356220.1 preprotein translocase subunit YajC -
  ACIUZZ_RS14115 (ACIUZZ_14115) tgt 3037788..3038909 (-) 1122 WP_026395217.1 tRNA guanosine(34) transglycosylase Tgt -
  ACIUZZ_RS14120 (ACIUZZ_14120) queA 3038995..3040020 (-) 1026 WP_026395216.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACIUZZ_RS14125 (ACIUZZ_14125) ruvB 3040013..3041077 (-) 1065 WP_035356217.1 Holliday junction branch migration DNA helicase RuvB -
  ACIUZZ_RS14130 (ACIUZZ_14130) ruvA 3041080..3041682 (-) 603 WP_026395215.1 Holliday junction branch migration protein RuvA -
  ACIUZZ_RS14140 (ACIUZZ_14140) radA 3042037..3043398 (-) 1362 WP_026395214.1 DNA repair protein RadA Machinery gene
  ACIUZZ_RS14145 (ACIUZZ_14145) - 3043416..3043904 (-) 489 WP_026395213.1 VanZ family protein -
  ACIUZZ_RS14150 (ACIUZZ_14150) - 3044240..3044872 (-) 633 WP_026395212.1 YigZ family protein -
  ACIUZZ_RS14155 (ACIUZZ_14155) hflX 3044875..3046689 (-) 1815 WP_026395211.1 GTPase HflX -
  ACIUZZ_RS14160 (ACIUZZ_14160) thiI 3047059..3048219 (-) 1161 WP_026395210.1 tRNA uracil 4-sulfurtransferase ThiI -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49922.04 Da        Isoelectric Point: 6.0943

>NTDB_id=1074429 ACIUZZ_RS14140 WP_026395214.1 3042037..3043398(-) (radA) [Acetobacterium dehalogenans DSM 11527]
MAKKKSIFVCQNCGYDSPKWMGKCPECDQWNTMVEELDLAKMGSKESTRERGIYSRPKSLAEIIYTGDTRYPTLNEEFDR
VLGGGIVPGGMILLGGDPGIGKSTLLLQTTEALGNQGYKILYISGEESEQQLKMRGERMHVKSENISFLSEINIPYLLTI
ILEERPDIVIIDSIQTMYSPDITSAPGSVSQIRENTGALMQLAKKDNISMVLVGHVTKDGAIAGPRVLEHMVDTVLYFEG
EKYHAYRVLRGVKNRFGSTNEIGIFEMTENGLESVANPSEMMLDSRPKNTCGSVVVPCIEGTRPLLIELQGLVSPTGFGN
PRRMATGMDYNRMVLLMAIMEKRLGIQMQSVDAYINVVGGIKVDEPALDLGVVAVLYSSLRDFQIPGDLMILGEVGLTGE
VRNIQHIEKRLIEGKKLGFKRCIIPKGNQKGLKVAGMAVLPVDNIRSALDILL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1074429 ACIUZZ_RS14140 WP_026395214.1 3042037..3043398(-) (radA) [Acetobacterium dehalogenans DSM 11527]
ATGGCAAAGAAAAAAAGTATTTTTGTCTGTCAGAACTGCGGTTATGATTCACCCAAATGGATGGGCAAATGTCCCGAGTG
CGATCAGTGGAATACCATGGTCGAGGAGCTTGATCTGGCCAAAATGGGGAGCAAGGAAAGTACCCGGGAACGGGGCATTT
ATTCCCGTCCCAAATCGCTGGCTGAGATTATCTATACCGGAGATACCCGGTATCCGACTCTCAACGAAGAGTTTGATCGG
GTTCTGGGCGGCGGAATTGTCCCCGGGGGGATGATTTTACTGGGCGGTGATCCGGGCATCGGTAAGTCGACGCTATTGCT
GCAGACCACCGAGGCGCTCGGTAATCAGGGCTATAAAATTCTCTATATTTCCGGGGAAGAGTCGGAACAGCAATTAAAAA
TGCGGGGAGAACGGATGCATGTTAAATCCGAAAACATTTCCTTCTTATCAGAGATCAATATCCCCTATCTGCTGACGATT
ATTTTAGAGGAACGGCCGGATATTGTGATCATCGATTCGATTCAGACCATGTACAGCCCGGATATCACCTCAGCCCCGGG
AAGTGTCAGTCAGATCCGGGAAAATACCGGAGCCCTGATGCAATTGGCCAAAAAAGACAATATCTCGATGGTGCTGGTGG
GCCATGTTACCAAAGACGGTGCTATTGCCGGACCCCGGGTGTTGGAACATATGGTGGATACTGTGCTTTATTTTGAAGGT
GAAAAATATCACGCCTATCGGGTGTTGCGGGGGGTCAAAAACCGTTTTGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GACCGAAAATGGACTGGAATCGGTGGCCAATCCATCCGAAATGATGCTGGACAGCCGCCCCAAAAATACCTGCGGATCGG
TGGTGGTGCCTTGTATCGAGGGTACTCGACCGCTACTGATTGAGCTTCAGGGTCTGGTTTCACCGACTGGTTTTGGAAAT
CCCCGGCGGATGGCCACGGGCATGGATTATAACCGAATGGTATTACTGATGGCGATCATGGAAAAACGGCTGGGAATTCA
GATGCAGTCGGTGGATGCTTACATTAACGTGGTGGGTGGTATCAAGGTCGATGAGCCGGCTTTGGATCTTGGTGTGGTTG
CCGTGCTTTATTCCAGCCTTCGGGATTTTCAGATCCCCGGCGATTTGATGATTCTGGGCGAGGTGGGATTAACAGGTGAG
GTGCGAAACATTCAGCACATTGAAAAACGACTGATCGAAGGAAAAAAACTGGGTTTCAAGCGCTGTATTATTCCTAAAGG
CAACCAGAAAGGGTTGAAGGTTGCCGGAATGGCGGTTCTCCCGGTTGATAATATTCGCTCAGCCCTGGACATTTTGCTGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.267

100

0.547
  radA Streptococcus mitis NCTC 12261

52.083

95.364

0.497
  radA Streptococcus pneumoniae Rx1

51.852

95.364

0.494
  radA Streptococcus pneumoniae D39

51.852

95.364

0.494
  radA Streptococcus pneumoniae R6

51.852

95.364

0.494
  radA Streptococcus pneumoniae TIGR4

51.852

95.364

0.494
  radA Streptococcus mitis SK321

51.852

95.364

0.494

Multiple sequence alignment