Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACIUZZ_RS04530 Genome accession   NZ_CP174122
Coordinates   924548..924910 (+) Length   120 a.a.
NCBI ID   WP_051355937.1    Uniprot ID   -
Organism   Acetobacterium dehalogenans DSM 11527     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 919548..929910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIUZZ_RS04505 (ACIUZZ_04505) - 919750..920667 (+) 918 WP_026395707.1 hypothetical protein -
  ACIUZZ_RS04510 (ACIUZZ_04510) - 921299..921718 (+) 420 WP_026395706.1 hypothetical protein -
  ACIUZZ_RS04515 (ACIUZZ_04515) - 921721..922788 (+) 1068 WP_084505039.1 tyrosine-type recombinase/integrase -
  ACIUZZ_RS04520 (ACIUZZ_04520) - 923323..923823 (+) 501 WP_051355938.1 JAB domain-containing protein -
  ACIUZZ_RS04525 (ACIUZZ_04525) - 924238..924555 (+) 318 WP_341349855.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIUZZ_RS04530 (ACIUZZ_04530) HI0659 924548..924910 (+) 363 WP_051355937.1 helix-turn-helix domain-containing protein Machinery gene
  ACIUZZ_RS04535 (ACIUZZ_04535) - 925071..925490 (+) 420 WP_026395703.1 hypothetical protein -
  ACIUZZ_RS04540 (ACIUZZ_04540) - 925487..925843 (+) 357 WP_026395702.1 hypothetical protein -
  ACIUZZ_RS04545 (ACIUZZ_04545) - 926016..926360 (+) 345 WP_414149999.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13701.96 Da        Isoelectric Point: 10.4372

>NTDB_id=1074421 ACIUZZ_RS04530 WP_051355937.1 924548..924910(+) (HI0659) [Acetobacterium dehalogenans DSM 11527]
MSKTKVSPIGSSWDEFEKRTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGTTDPQLMTIL
KILRPLGKTLAIVPIEEEPHRNVHFKTFKKGSTFKQKPIR

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1074421 ACIUZZ_RS04530 WP_051355937.1 924548..924910(+) (HI0659) [Acetobacterium dehalogenans DSM 11527]
ATGAGTAAGACAAAAGTAAGTCCCATTGGATCAAGCTGGGATGAGTTTGAAAAAAGAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTGGCATTAATAAGCGAATTAATTCGTGCCAGAAATGATCAGGGTATCACTCAAAAGCAGCTGG
AAGAAGCCAGTGGTGTCAAACAACCAGTCATAGCCAGAATGGAAAAAGGAACAACCGATCCCCAATTGATGACCATTTTA
AAAATACTAAGACCACTAGGAAAAACCCTGGCCATCGTGCCAATTGAAGAAGAACCACACCGAAACGTTCATTTTAAAAC
ATTTAAAAAGGGCAGTACATTCAAACAAAAACCCATTAGATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.304

76.667

0.508

Multiple sequence alignment