Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACIUZZ_RS00640 Genome accession   NZ_CP174122
Coordinates   130544..131224 (+) Length   226 a.a.
NCBI ID   WP_414149985.1    Uniprot ID   -
Organism   Acetobacterium dehalogenans DSM 11527     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 125544..136224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIUZZ_RS00615 (ACIUZZ_00615) - 125710..125967 (+) 258 Protein_117 iron chaperone -
  ACIUZZ_RS00620 (ACIUZZ_00620) - 126034..126414 (+) 381 Protein_118 DUF1801 domain-containing protein -
  ACIUZZ_RS00625 (ACIUZZ_00625) - 126569..127435 (+) 867 WP_156913176.1 hypothetical protein -
  ACIUZZ_RS00630 (ACIUZZ_00630) - 127615..129354 (+) 1740 WP_026393335.1 ABC transporter ATP-binding protein -
  ACIUZZ_RS00635 (ACIUZZ_00635) - 129351..130544 (+) 1194 WP_414149984.1 ABC transporter ATP-binding protein -
  ACIUZZ_RS00640 (ACIUZZ_00640) rcrQ 130544..131224 (+) 681 WP_414149985.1 ABC transporter ATP-binding protein Regulator
  ACIUZZ_RS00645 (ACIUZZ_00645) yaaA 131350..132096 (-) 747 WP_026393337.1 peroxide stress protein YaaA -
  ACIUZZ_RS00650 (ACIUZZ_00650) - 132258..133199 (+) 942 WP_026393338.1 helix-turn-helix transcriptional regulator -
  ACIUZZ_RS00655 (ACIUZZ_00655) - 133316..134893 (-) 1578 WP_169727683.1 cache domain-containing protein -
  ACIUZZ_RS00660 (ACIUZZ_00660) - 135178..135765 (+) 588 WP_156913177.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24818.63 Da        Isoelectric Point: 5.0972

>NTDB_id=1074418 ACIUZZ_RS00640 WP_414149985.1 130544..131224(+) (rcrQ) [Acetobacterium dehalogenans DSM 11527]
MEDISFTVRPNEMVAIVGPTGAGKTTLVNLLMRFYELDGGTIKVDGIDIKDLTKSGLRRMVGMVLQDTWLFKGTIAENIA
YGKMDATREEIIQVAKAARCDHFIRTLSEGYETVISNEEGTVSQGQMQLLTIARAMLANPALMILDEATSSVDTKTELQV
QKAMLSSMQGKTSFVIAHRLSTIKSADLILVMKNGTIVEKGTHQELLAADTFYAELYNSQFNNLTG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1074418 ACIUZZ_RS00640 WP_414149985.1 130544..131224(+) (rcrQ) [Acetobacterium dehalogenans DSM 11527]
ATGGAGGACATCAGCTTTACCGTCAGACCTAACGAGATGGTGGCCATTGTCGGGCCTACCGGTGCCGGCAAGACCACCCT
GGTCAATCTGCTGATGCGGTTCTATGAACTGGATGGCGGCACCATCAAAGTCGATGGAATTGATATTAAAGATCTGACTA
AAAGCGGACTGCGGCGGATGGTCGGAATGGTGCTTCAGGATACCTGGCTCTTTAAAGGGACGATTGCTGAAAATATTGCT
TACGGCAAGATGGATGCCACCCGGGAAGAGATCATTCAGGTGGCCAAGGCGGCCCGCTGCGACCATTTTATCCGAACCTT
GTCAGAAGGTTACGAGACGGTGATCTCCAATGAAGAAGGGACGGTTTCCCAGGGGCAAATGCAGCTGTTGACCATCGCCC
GGGCAATGCTGGCCAATCCGGCGCTGATGATTCTGGATGAAGCAACCTCCAGCGTTGACACCAAAACTGAATTGCAGGTA
CAGAAAGCGATGCTTTCGAGTATGCAGGGAAAAACCAGCTTTGTCATTGCCCACCGGCTGTCCACCATCAAGTCAGCGGA
TCTGATTCTGGTGATGAAAAACGGCACCATTGTTGAAAAGGGAACCCATCAGGAATTGCTGGCCGCTGATACATTTTATG
CTGAGTTGTATAATAGTCAGTTTAATAATTTGACGGGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.466

97.788

0.562
  comA/nlmT Streptococcus mutans UA159

39.269

96.903

0.381
  rcrP Streptococcus mutans UA159

37.778

99.558

0.376

Multiple sequence alignment