Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AABA74_RS08970 Genome accession   NZ_AP028932
Coordinates   1823301..1823735 (+) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus velezensis strain RB.IBE29     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1818301..1828735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS08965 (RBIBE_17090) - 1821801..1823012 (-) 1212 WP_058906704.1 cytochrome P450 -
  AABA74_RS08970 (RBIBE_17100) nucA/comI 1823301..1823735 (+) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AABA74_RS08975 (RBIBE_17110) - 1823795..1824562 (+) 768 WP_025851167.1 YoaK family protein -
  AABA74_RS08980 (RBIBE_17120) - 1824583..1824945 (-) 363 WP_003154082.1 hypothetical protein -
  AABA74_RS08985 (RBIBE_17130) - 1825138..1826466 (-) 1329 WP_032857388.1 S8 family peptidase -
  AABA74_RS08990 (RBIBE_17140) - 1826645..1826878 (+) 234 WP_058906034.1 hypothetical protein -
  AABA74_RS08995 (RBIBE_17150) - 1827134..1827841 (+) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  AABA74_RS09000 (RBIBE_17160) - 1827902..1828354 (+) 453 WP_014305039.1 OsmC family protein -
  AABA74_RS09005 (RBIBE_17170) - 1828368..1828721 (-) 354 WP_003154073.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=107420 AABA74_RS08970 WP_003154085.1 1823301..1823735(+) (nucA/comI) [Bacillus velezensis strain RB.IBE29]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=107420 AABA74_RS08970 WP_003154085.1 1823301..1823735(+) (nucA/comI) [Bacillus velezensis strain RB.IBE29]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment