Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AABA74_RS07540 Genome accession   NZ_AP028932
Coordinates   1428208..1428492 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain RB.IBE29     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423208..1433492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS07520 (RBIBE_14170) - 1424455..1425363 (+) 909 WP_058905990.1 ketopantoate reductase family protein -
  AABA74_RS07525 (RBIBE_14180) - 1425393..1426625 (-) 1233 WP_025851469.1 aminopeptidase -
  AABA74_RS07530 (RBIBE_14190) - 1426726..1426860 (-) 135 WP_338260834.1 protein YkpC -
  AABA74_RS07535 (RBIBE_14200) mreBH 1426932..1427939 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  AABA74_RS07540 (RBIBE_14210) abrB 1428208..1428492 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AABA74_RS07545 (RBIBE_14220) - 1428665..1429969 (+) 1305 WP_014304932.1 ATP-binding protein -
  AABA74_RS07550 (RBIBE_14230) - 1429971..1430798 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase family protein -
  AABA74_RS07555 (RBIBE_14240) ktrC 1430839..1431504 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  AABA74_RS07560 (RBIBE_14250) ade 1431653..1433386 (+) 1734 WP_058905991.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=107415 AABA74_RS07540 WP_024085249.1 1428208..1428492(+) (abrB) [Bacillus velezensis strain RB.IBE29]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=107415 AABA74_RS07540 WP_024085249.1 1428208..1428492(+) (abrB) [Bacillus velezensis strain RB.IBE29]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment