Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACHOYE_RS08280 Genome accession   NZ_CP174015
Coordinates   1728694..1729320 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 2024CK-01663     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1723694..1734320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHOYE_RS08260 (ACHOYE_08260) - 1724088..1725848 (-) 1761 WP_063925136.1 Lon protease family protein -
  ACHOYE_RS08265 (ACHOYE_08265) matP 1726035..1726487 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  ACHOYE_RS08270 (ACHOYE_08270) ompA 1726557..1727612 (-) 1056 WP_020884794.1 porin OmpA -
  ACHOYE_RS08275 (ACHOYE_08275) sulA 1727967..1728476 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  ACHOYE_RS08280 (ACHOYE_08280) sxy/tfoX 1728694..1729320 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  ACHOYE_RS08285 (ACHOYE_08285) yccS 1729277..1731439 (-) 2163 WP_063925135.1 YccS family putative transporter -
  ACHOYE_RS08290 (ACHOYE_08290) - 1731459..1731905 (-) 447 WP_014169434.1 YccF domain-containing protein -
  ACHOYE_RS08295 (ACHOYE_08295) helD 1732029..1734083 (+) 2055 WP_063925134.1 DNA helicase IV -

Sequence


Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=1074062 ACHOYE_RS08280 WP_020884792.1 1728694..1729320(+) (sxy/tfoX) [Enterobacter ludwigii strain 2024CK-01663]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1074062 ACHOYE_RS08280 WP_020884792.1 1728694..1729320(+) (sxy/tfoX) [Enterobacter ludwigii strain 2024CK-01663]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGCCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATTACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577


Multiple sequence alignment