Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIY8D_RS17280 Genome accession   NZ_CP173740
Coordinates   3532408..3533004 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 219-96     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527408..3538004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIY8D_RS17265 (ACIY8D_17265) helD 3527616..3529670 (-) 2055 WP_004179218.1 DNA helicase IV -
  ACIY8D_RS17270 (ACIY8D_17270) - 3529795..3530241 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACIY8D_RS17275 (ACIY8D_17275) yccS 3530259..3532394 (+) 2136 WP_186502211.1 YccS family putative transporter -
  ACIY8D_RS17280 (ACIY8D_17280) sxy/tfoX 3532408..3533004 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACIY8D_RS17285 (ACIY8D_17285) sulA 3533353..3533862 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACIY8D_RS17290 (ACIY8D_17290) ompA 3534215..3535285 (+) 1071 WP_002898408.1 porin OmpA -
  ACIY8D_RS17295 (ACIY8D_17295) matP 3535417..3535869 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACIY8D_RS17300 (ACIY8D_17300) - 3536055..3537812 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1073959 ACIY8D_RS17280 WP_004179217.1 3532408..3533004(-) (sxy/tfoX) [Klebsiella pneumoniae strain 219-96]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1073959 ACIY8D_RS17280 WP_004179217.1 3532408..3533004(-) (sxy/tfoX) [Klebsiella pneumoniae strain 219-96]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment