Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AABA74_RS00580 | Genome accession | NZ_AP028932 |
| Coordinates | 104122..106560 (+) | Length | 812 a.a. |
| NCBI ID | WP_058906512.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain RB.IBE29 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99122..111560
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABA74_RS00565 (RBIBE_00840) | ctsR | 101999..102463 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| AABA74_RS00570 (RBIBE_00850) | - | 102477..103034 (+) | 558 | WP_003156397.1 | UvrB/UvrC motif-containing protein | - |
| AABA74_RS00575 (RBIBE_00860) | - | 103034..104125 (+) | 1092 | WP_003156398.1 | protein arginine kinase | - |
| AABA74_RS00580 (RBIBE_00870) | clpC | 104122..106560 (+) | 2439 | WP_058906512.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| AABA74_RS00585 (RBIBE_00880) | - | 106811..107047 (+) | 237 | WP_052587026.1 | mersacidin/lichenicidin family type 2 lantibiotic | - |
| AABA74_RS00590 (RBIBE_00890) | lanM | 107104..110145 (+) | 3042 | WP_058906513.1 | type 2 lanthipeptide synthetase LanM | - |
Sequence
Protein
Download Length: 812 a.a. Molecular weight: 90176.59 Da Isoelectric Point: 5.7558
>NTDB_id=107387 AABA74_RS00580 WP_058906512.1 104122..106560(+) (clpC) [Bacillus velezensis strain RB.IBE29]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESATSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGANSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTDA
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESATSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGANSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTDA
Nucleotide
Download Length: 2439 bp
>NTDB_id=107387 AABA74_RS00580 WP_058906512.1 104122..106560(+) (clpC) [Bacillus velezensis strain RB.IBE29]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAGGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCTCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGTGCCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGCTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGATTGATCCGTGAAGGAGAAGGCGTGGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTAAATA
AAGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTGCCAACAGCAATGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGGCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAAAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGATGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCCACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCGGCTCTCGAGCGCCGTTTCCAGCCGATTCAAGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CCGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCAGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACCTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCCGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCATTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTGGCAAAGGCTGTCAGACGTGCAAGAGCCGGACTGAAGG
ACCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTATTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCGAGCGAGCTGAA
GCGCAACAAATATGTAGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCCAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGATTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGGATGCTTAA
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAGGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCTCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGTGCCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGCTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGATTGATCCGTGAAGGAGAAGGCGTGGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTAAATA
AAGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTGCCAACAGCAATGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGGCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAAAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGATGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCCACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCGGCTCTCGAGCGCCGTTTCCAGCCGATTCAAGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CCGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCAGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACCTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCCGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCATTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTGGCAAAGGCTGTCAGACGTGCAAGAGCCGGACTGAAGG
ACCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTATTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCGAGCGAGCTGAA
GCGCAACAAATATGTAGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCCAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGATTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGGATGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.671 |
99.877 |
0.966 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.688 |
98.645 |
0.49 |
| clpC | Streptococcus thermophilus LMD-9 |
46.359 |
100 |
0.47 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.117 |
100 |
0.468 |
| clpC | Streptococcus mutans UA159 |
44.203 |
100 |
0.451 |
| clpC | Streptococcus pneumoniae D39 |
44.895 |
100 |
0.45 |
| clpC | Streptococcus pneumoniae Rx1 |
44.895 |
100 |
0.45 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.772 |
100 |
0.448 |
| clpE | Streptococcus mutans UA159 |
53.067 |
80.296 |
0.426 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.709 |
84.729 |
0.421 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.227 |
80.172 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.227 |
80.172 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.227 |
80.172 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.227 |
80.172 |
0.419 |