Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI7YU_RS22500 Genome accession   NZ_CP173722
Coordinates   5066578..5067945 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas siliginis strain P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5061578..5072945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YU_RS22475 (ACI7YU_22485) - 5061719..5062423 (+) 705 WP_406227501.1 GntR family transcriptional regulator -
  ACI7YU_RS22480 (ACI7YU_22490) yjiA 5062547..5063518 (-) 972 WP_095181860.1 GTPase -
  ACI7YU_RS22485 (ACI7YU_22495) - 5063671..5063868 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  ACI7YU_RS22490 (ACI7YU_22500) - 5063884..5065950 (-) 2067 WP_041477781.1 carbon starvation CstA family protein -
  ACI7YU_RS22495 (ACI7YU_22505) - 5066110..5066478 (+) 369 WP_041477779.1 PilZ domain-containing protein -
  ACI7YU_RS22500 (ACI7YU_22510) radA 5066578..5067945 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  ACI7YU_RS22505 (ACI7YU_22515) - 5067993..5068538 (-) 546 WP_056790532.1 ankyrin repeat domain-containing protein -
  ACI7YU_RS22510 (ACI7YU_22520) katB 5068599..5070140 (-) 1542 WP_406227503.1 catalase KatB -
  ACI7YU_RS22515 (ACI7YU_22525) mscL 5070426..5070839 (+) 414 WP_024014404.1 large-conductance mechanosensitive channel protein MscL -
  ACI7YU_RS22520 (ACI7YU_22530) - 5070885..5071661 (-) 777 WP_406227504.1 ferredoxin--NADP reductase -
  ACI7YU_RS22525 (ACI7YU_22535) - 5071975..5072685 (+) 711 WP_177434230.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=1073841 ACI7YU_RS22500 WP_007909773.1 5066578..5067945(-) (radA) [Pseudomonas siliginis strain P]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1073841 ACI7YU_RS22500 WP_007909773.1 5066578..5067945(-) (radA) [Pseudomonas siliginis strain P]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCCACGGCACCTACCGGGCGCACCGGTTGGGCTG
GCCAGCAGGCGCAGATCAAGACGCTCGCCGAAGTCAGCATCGAAGAGATTCCACGTTTTTCCACCGCCTCCGGTGAGCTC
GACCGCGTGCTCGGCGGTGGTCTGGTCGATGGCTCGGTTGTGCTGATCGGCGGTGATCCGGGGATCGGCAAATCGACCAT
TCTGTTGCAAACCCTGTGCAATCTGGCCAAAAGCATGCCGGCGCTGTACGTCACTGGTGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGCCGTCTCGGCCTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACCGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCGCC
GGGCGGCGTGTCGCAGGTGCGTGAAAGTGCGGCGCTGCTGGTGCGTTACGCCAAACAGAGCGGCACGGCGATCTTCCTCG
TCGGCCACGTCACCAAAGAGGGCGCCTTGGCCGGTCCGCGTGTTCTGGAACACATGGTCGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGTCGTCTACGTCTGCTGCGCGCGGTGAAGAACCGTTTCGGGGCGGTCAACGAATTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGACCGATGCTGGTGGAAGTGCAGGCACTGGTCGATGACAGCCATCTGGCC
AACCCGCGTCGGGTGACGCTGGGGCTGGATCAGAACCGTCTGGCGATGTTGCTCGCGGTGCTGCACCGCCACGGCGGGAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGTGGCGTGAAGGTGCTGGAGACAGCGTCGGATCTGGCGTTGA
TGGCGGCGGTGATGTCGAGTTTGCGCAATCGGCCGTTACCGCATGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAGGTGCGCCCGGTGCCAAGCGGGCAGGAGCGGCTGAAAGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCGAA
GGGTAATGCTCCGAAGGAATCGCCTCCCGGCTTGCAGATCATCGCCGTGACGCGTCTCGAACAGGCCCTCGACGCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464

Multiple sequence alignment