Detailed information NTG1073763

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACIRUI_RS06130
• Genome accession: NZ_CP173697
• Coordinates: 1270410..1271780 (-)
• Length: 456 a.a.
• NCBI ID: WP_055066862.1
• Uniprot ID: A0A0M6WBS4
• Organism: Roseburia faecis strain JCM 17581
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1265410..1276780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIRUI_RS06130 (ACIRUI_06135)	radA	1270410..1271780 (-)	1371	WP_055066862.1	DNA repair protein RadA	Machinery gene
ACIRUI_RS06135 (ACIRUI_06140)	-	1271784..1272197 (-)	414	WP_055066863.1	hypothetical protein	-
ACIRUI_RS06140 (ACIRUI_06145)	-	1272242..1274689 (-)	2448	WP_055066864.1	ATP-dependent Clp protease ATP-binding subunit	-
ACIRUI_RS06145 (ACIRUI_06150)	-	1274710..1276344 (-)	1635	WP_055066865.1	cadherin-like beta sandwich domain-containing protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 49558.23 Da
• Isoelectric Point: 5.8208

>NTDB_id=1073763 ACIRUI_RS06130 WP_055066862.1 1270410..1271780(-) (radA) [Roseburia faecis strain JCM 17581]
MAKAKTSAFFCQNCGYESSKWMGQCPACREWNTFVEELVDRKALSTSGKIKPVTEAKPVPLSAIKTSDEERISTSMPELD
RVLGGGVVKGSLVLVGGDPGIGKSTLLLQVCRNLSGQNLSVLYVSGEESLQQIKLRAERIGTFSDHLELLCETSLDTIRT
VIERNKPQIVVIDSIQTMYNENVSSAPGSVSQVRESTGVLMQIAKGMDISIFIVGHVTKEGVVAGPRVLEHMVDTVLYFE
GDRHESYRILRGVKNRFGSTNEIGVFEMRTEGLVEVENPSEYMLSGKPKDASGSVVACSIEGTRPILLEIQALICHSYFN
NPRRTATGTDFNRVNLLMAVLEKRIGMQLSDCDAYVNIAGGIRMNEPAIDLGIVLAIMSSKLDLTIDEKTICFGEVGLSG
EVRGVSMAEQRVAEAAKLGFEVCILPKVSLPSVGKKYAMKLIGVANVREALDAIQA

Nucleotide

• Length: 1371 bp

>NTDB_id=1073763 ACIRUI_RS06130 WP_055066862.1 1270410..1271780(-) (radA) [Roseburia faecis strain JCM 17581]
ATGGCAAAAGCAAAAACCAGTGCGTTTTTTTGCCAGAATTGCGGATATGAATCATCCAAATGGATGGGCCAGTGTCCGGC
ATGCAGAGAGTGGAACACGTTCGTAGAGGAACTGGTGGACCGGAAAGCACTCAGTACTTCCGGAAAAATAAAACCGGTGA
CAGAAGCGAAACCTGTTCCGCTTTCTGCAATAAAGACATCGGATGAGGAGCGGATTTCCACATCCATGCCGGAGCTGGAT
CGTGTATTGGGCGGGGGAGTTGTAAAAGGCTCCCTCGTTCTGGTTGGAGGAGATCCGGGAATCGGTAAATCAACGCTTTT
ATTACAAGTCTGCCGGAATCTGTCCGGGCAGAATCTTTCGGTACTGTATGTGTCCGGGGAAGAGTCCCTGCAGCAGATCA
AACTGCGTGCAGAGCGGATTGGCACATTCAGTGATCATCTGGAACTGTTGTGTGAGACCAGTCTGGACACCATACGCACG
GTAATTGAACGGAATAAGCCACAGATTGTGGTGATCGACAGTATCCAGACCATGTATAACGAAAACGTTTCCTCGGCGCC
TGGCAGCGTGTCACAGGTGCGTGAGTCTACAGGTGTTCTTATGCAGATCGCAAAAGGAATGGATATCTCGATCTTTATTG
TCGGGCATGTGACAAAGGAAGGGGTCGTGGCAGGTCCACGTGTACTGGAACATATGGTGGATACGGTTCTTTATTTTGAA
GGAGACCGTCATGAAAGCTACCGGATTCTGCGTGGCGTGAAGAACCGTTTTGGCTCCACGAACGAGATCGGTGTTTTTGA
GATGCGCACAGAGGGACTGGTTGAGGTGGAGAATCCGTCCGAGTATATGCTCAGCGGCAAACCAAAGGATGCTTCCGGTT
CTGTCGTGGCATGTTCCATCGAGGGTACCCGTCCGATTCTTTTGGAAATTCAGGCGCTGATCTGTCACAGCTATTTCAAC
AATCCGAGGAGAACTGCGACCGGAACGGACTTTAACCGCGTGAATCTGCTGATGGCAGTTTTGGAAAAACGTATTGGAAT
GCAGTTGTCGGATTGTGATGCTTATGTAAATATCGCGGGCGGAATCCGTATGAATGAACCGGCAATTGATCTGGGAATTG
TGCTTGCCATTATGTCAAGCAAACTGGATCTGACGATTGATGAGAAGACCATCTGTTTTGGCGAGGTGGGATTAAGCGGG
GAAGTGCGTGGTGTAAGCATGGCAGAACAACGTGTGGCAGAGGCAGCCAAACTTGGTTTTGAAGTATGCATTCTGCCAAA
AGTATCCCTTCCTTCTGTAGGGAAGAAGTATGCAATGAAGCTGATCGGGGTGGCAAATGTCAGGGAGGCACTGGATGCAA
TTCAGGCATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (343-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• AAA domain (AAA_25) (63-221)

3D structure

• AlphaFold DB: A0A0M6WBS4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	59.737	100	0.599
radA	Streptococcus mitis NCTC 12261	53.913	100	0.544
radA	Streptococcus mitis SK321	53.696	100	0.542
radA	Streptococcus pneumoniae Rx1	53.696	100	0.542
radA	Streptococcus pneumoniae D39	53.696	100	0.542
radA	Streptococcus pneumoniae R6	53.696	100	0.542
radA	Streptococcus pneumoniae TIGR4	53.696	100	0.542