Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABA82_RS03355 Genome accession   NZ_AP028930
Coordinates   714871..716244 (+) Length   457 a.a.
NCBI ID   WP_039398772.1    Uniprot ID   A0A5E4YTV1
Organism   Pandoraea sputorum strain THI4931     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 709871..721244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA82_RS03335 (THI4931_06630) - 710115..711230 (+) 1116 WP_052252914.1 DUF1853 family protein -
  AABA82_RS03340 (THI4931_06640) thiD 711303..712145 (-) 843 WP_150777631.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AABA82_RS03345 (THI4931_06650) lplT 712147..713439 (-) 1293 WP_039398774.1 lysophospholipid transporter LplT -
  AABA82_RS03350 (THI4931_06660) alr 713778..714848 (+) 1071 WP_150659227.1 alanine racemase -
  AABA82_RS03355 (THI4931_06670) radA 714871..716244 (+) 1374 WP_039398772.1 DNA repair protein RadA Machinery gene
  AABA82_RS03360 (THI4931_06680) - 716314..717015 (-) 702 WP_338299784.1 hypothetical protein -
  AABA82_RS03365 (THI4931_06690) - 717092..719032 (-) 1941 WP_039398768.1 ATP-binding cassette domain-containing protein -
  AABA82_RS03370 (THI4931_06700) cls 719247..720674 (-) 1428 WP_338299785.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48193.38 Da        Isoelectric Point: 6.9985

>NTDB_id=107373 AABA82_RS03355 WP_039398772.1 714871..716244(+) (radA) [Pandoraea sputorum strain THI4931]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=107373 AABA82_RS03355 WP_039398772.1 714871..716244(+) (radA) [Pandoraea sputorum strain THI4931]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAATGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCCAATTG
CAATGGCTGGAATACGCTCGTCGAATCGGTAGCGGAAGCGTCTACCGGTCATCGCTATCAATCGCTGGCCAAGAGCACGC
CGATTCGCAAACTGGCGGAAATCGAAGCCTCTGATGTACCGCGTTTTTCCAGCGGCGTGAGCGAATTCGATCGCGTGCTG
GGCGGAGGTCTCGTCGCGGGCGGTGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGGGCGTTGTATGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGCGGCTCGGCCTTGGGGCGGCTGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAAAAACCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGAGAGTGCGCAGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGTAGTCTCGCCGGGCCACGCGTGTTGGAACACATCGTGGACACGGTGCTGTACTTC
GAAGGCGATACGCATTCGTCGTATCGTCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCTGTGAATGAGCTGGGCGTGTT
TGCAATGACGGAAAAGGGGTTGCGTGGCGTGGCCAACCCGTCGGCGCTCTTCCTCTCGCAGCATGAGCAAAGCGTGCCTG
GTTCGTGTGTGCTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATACGGCGCAGGTG
CCGAATCCGCGACGTCTGGCCGTGGGTCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGACGTGTTTCTGAATGCCGTCGGCGGTGTGAAGATTACCGAACCGGCTGCCGACCTGGCGG
TGTTGCTCGCGATCCATTCGTCATTGCGCAACAAACCGCTGCCACGAGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGTCTCAAAGAGGCGGCTAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCAAATGCGCCGAAGCAGCCGATCGACGGGCTGGAGGTCCATGCCGTCGACCGTCTGGAACAAGCCATCTCGGTGG
TGGCAGGACTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4YTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

49.07

94.092

0.462
  radA Streptococcus pneumoniae D39

49.07

94.092

0.462
  radA Streptococcus pneumoniae R6

49.07

94.092

0.462
  radA Streptococcus pneumoniae TIGR4

49.07

94.092

0.462
  radA Streptococcus mitis SK321

49.07

94.092

0.462
  radA Streptococcus mitis NCTC 12261

49.07

94.092

0.462

Multiple sequence alignment