Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACI5E1_RS07160 Genome accession   NZ_CP173662
Coordinates   1571664..1571957 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain APL2305174E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566664..1576957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5E1_RS07130 (ACI5E1_07120) artM 1566996..1567679 (-) 684 WP_005605188.1 arginine ABC transporter permease ArtM -
  ACI5E1_RS07135 (ACI5E1_07125) artQ 1567679..1568350 (-) 672 WP_237593313.1 arginine ABC transporter permease ArtQ -
  ACI5E1_RS07140 (ACI5E1_07130) - 1568356..1569075 (-) 720 WP_005619670.1 transporter substrate-binding domain-containing protein -
  ACI5E1_RS07145 (ACI5E1_07135) artP 1569095..1569829 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  ACI5E1_RS07150 (ACI5E1_07140) - 1570054..1570551 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  ACI5E1_RS07155 (ACI5E1_07145) - 1570624..1571586 (+) 963 WP_005619672.1 calcium/sodium antiporter -
  ACI5E1_RS07160 (ACI5E1_07150) HI0659 1571664..1571957 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  ACI5E1_RS07165 (ACI5E1_07155) - 1571938..1572309 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACI5E1_RS07170 (ACI5E1_07160) - 1572503..1574254 (+) 1752 WP_043948002.1 protein-disulfide reductase DsbD -
  ACI5E1_RS07175 (ACI5E1_07165) - 1574312..1574881 (+) 570 WP_005605204.1 elongation factor P hydroxylase -
  ACI5E1_RS07180 (ACI5E1_07170) rsmI 1574925..1575779 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=1073608 ACI5E1_RS07160 WP_005598477.1 1571664..1571957(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2305174E]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1073608 ACI5E1_RS07160 WP_005598477.1 1571664..1571957(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2305174E]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619

Multiple sequence alignment