Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACAM22_RS06040 Genome accession   NZ_AP028929
Coordinates   1342465..1344267 (-) Length   600 a.a.
NCBI ID   WP_369606513.1    Uniprot ID   A0AAT9G1J8
Organism   Streptococcus sp. SN-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337465..1349267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS06025 (MASAN616_11820) - 1339360..1340583 (-) 1224 WP_369606510.1 FtsW/RodA/SpoVE family cell cycle protein -
  ACAM22_RS06030 (MASAN616_11830) prsA 1340745..1341683 (-) 939 WP_369606511.1 peptidylprolyl isomerase PrsA -
  ACAM22_RS06035 (MASAN616_11840) - 1341750..1342463 (-) 714 WP_369606512.1 O-methyltransferase -
  ACAM22_RS06040 (MASAN616_11850) pepF 1342465..1344267 (-) 1803 WP_369606513.1 oligoendopeptidase F Regulator
  ACAM22_RS06045 (MASAN616_11860) coiA 1344286..1345239 (-) 954 WP_261050244.1 competence protein CoiA family protein Machinery gene
  ACAM22_RS06050 (MASAN616_11870) tehB 1345313..1346173 (-) 861 WP_369606514.1 SAM-dependent methyltransferase TehB -
  ACAM22_RS06055 (MASAN616_11880) smpB 1346189..1346656 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  ACAM22_RS06060 (MASAN616_11890) rnr 1346619..1348973 (-) 2355 WP_369606515.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 70050.04 Da        Isoelectric Point: 4.5734

>NTDB_id=107333 ACAM22_RS06040 WP_369606513.1 1342465..1344267(-) (pepF) [Streptococcus sp. SN-1]
MVLQRYEINEKDTWDLSTIYPTDQAWEEALKDLTEQLEKVSQYEGHLLDSADSLLEITEFSLEMERQIEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMDISEKQYADFLEAQPKLQVYKHYFDKLLQGKEHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPFVKDEDGNEVQLSHGVYMRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSYVEYSFTYQEALK
KAEDALSVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLS

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=107333 ACAM22_RS06040 WP_369606513.1 1342465..1344267(-) (pepF) [Streptococcus sp. SN-1]
ATGGTATTACAAAGATATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATTTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAACTGGAGAAAGTAAGCCAGTATGAAGGCCATCTCCTAGATAGTGCGGATAGCC
TACTAGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAAATAGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTACAGTCAGCTAGATCAAGCTTTTTC
ATTCTATGAGCCTGAATTTATGGATATTAGTGAAAAGCAGTATGCTGACTTTTTAGAAGCTCAACCAAAATTGCAGGTTT
ATAAACACTATTTTGATAAGCTTTTGCAAGGCAAGGAACACGTTCTTTCACAACGTGAAGAAGAATTATTAGCTGGGGCT
GGAGAAATATTTGGTTCGGCAAGTGAAACCTTCGCTATTTTAGATAATGCAGATATCGTCTTTCCATTTGTTAAAGATGA
AGATGGTAACGAAGTACAATTATCACATGGCGTTTATATGCGTTTGATGGAGTCTAAAAACCGTGAGGTGCGTCGTGGTG
CCTATCAAGCTCTTTATGCGACTTATGAACAATTCCAACATACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTTCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGTGCGCGTCATGCAGCCCTAGCGGCCAATTTTGTTCCAGAGAGTGTTTA
TGACAATTTGGTGGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAGCTTCGTTCAAAAATCTTGGGAA
TTTCAGACCTCAAGATGTACGATGTCTACACACCACTTTCATATGTTGAATATAGTTTTACCTACCAAGAAGCCTTGAAA
AAAGCAGAAGATGCTTTGTCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTTTATGAAAATCAAGGCAAGCGTTCAGGGGCTTACTCTGGTGGTTCTTACGATACAAATGCCTTTATGCTTCTTAACT
GGCAGGATAATCTAGACAATCTCTTTACTCTTGTTCATGAAACAGGTCATAGTATGCATTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTACTCTATCTTCTTGGCTGAGATTGCTTCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCCATTCACCAAGCGGATCAAAATGGTGAAGTCTTGACAAGCGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTACGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGATTATCTCAAGGCAGGTAAATCTGACTACCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGCCGTTT
AAATGAGTTTGAAGCCCTAGTTGAAAAATTGGGATTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment