Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI513_RS09530 Genome accession   NZ_CP173626
Coordinates   2074214..2075563 (+) Length   449 a.a.
NCBI ID   WP_404987082.1    Uniprot ID   -
Organism   Chryseobacterium sp. M5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069214..2080563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI513_RS09515 (ACI513_09515) - 2071348..2072955 (-) 1608 WP_074232284.1 CTP synthase -
  ACI513_RS09520 (ACI513_09520) - 2073131..2073697 (-) 567 WP_210151454.1 YceI family protein -
  ACI513_RS09525 (ACI513_09525) - 2073867..2074166 (-) 300 WP_404987081.1 hypothetical protein -
  ACI513_RS09530 (ACI513_09530) radA 2074214..2075563 (+) 1350 WP_404987082.1 DNA repair protein RadA Machinery gene
  ACI513_RS09535 (ACI513_09535) - 2075614..2077152 (+) 1539 WP_404987083.1 zinc-dependent metalloprotease -
  ACI513_RS09540 (ACI513_09540) - 2077372..2077965 (+) 594 WP_404987084.1 ACP phosphodiesterase -
  ACI513_RS09545 (ACI513_09545) - 2077969..2078472 (-) 504 WP_404987085.1 DUF6702 family protein -
  ACI513_RS09550 (ACI513_09550) - 2078472..2078780 (-) 309 WP_210151460.1 hypothetical protein -
  ACI513_RS09555 (ACI513_09555) - 2078756..2078989 (-) 234 WP_404987086.1 hypothetical protein -
  ACI513_RS09560 (ACI513_09560) - 2079055..2079633 (+) 579 WP_404987087.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49794.48 Da        Isoelectric Point: 6.5078

>NTDB_id=1073325 ACI513_RS09530 WP_404987082.1 2074214..2075563(+) (radA) [Chryseobacterium sp. M5]
MAKLKTAYFCQNCGSQYPQWTGQCKNCLEWNTLVEEIVEKTSSKTPPFSKTKQNVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKLPKKKFGIKIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1073325 ACI513_RS09530 WP_404987082.1 2074214..2075563(+) (radA) [Chryseobacterium sp. M5]
ATGGCAAAACTTAAAACAGCATACTTCTGTCAAAACTGTGGATCACAATACCCTCAATGGACTGGGCAATGTAAAAACTG
TCTGGAATGGAACACTTTGGTAGAAGAAATTGTAGAAAAAACATCTTCAAAAACACCTCCTTTCTCAAAAACAAAACAAA
ACGTAATCAACATCATCGAAGTTGAAGCCGTAGAAGAACCGAGAATAAAAACACCTTCCGATGAACTGAACCGTGTTTTG
GGAGGCGGAATTGTATTAGGATCTGTCACTTTAATAGGCGGTGAACCCGGAATTGGTAAATCTACTCTGCTTCTTCAGCT
TGCTTTAAAAATGAAGAAGAAAATTTTCTATGTTTCCGGTGAAGAAAGTGCGTCTCAAATTAAAATGAGAGCTGACCGTT
TAGCCGATGTCAAAAATCCAAACTGTTTTTTATATACTGAAACTTCTTTAGAGAAAATTCTTCATGAAGCTAAAAAATTA
GAACCGGATTTTGTGATTATCGATTCTATTCAAACCTTACAGTCTCAATTGATAGAAAGTTCGCCAGGAACAGTTTCTCA
GATTCGAGAATGCTCCAATGAGATTATTAAATATGCCAAAGAAAATAATGTTCCTGTATTTTTGGTGGGTCACATCACAA
AAGACGGACAAATTGCAGGACCAAAAGTTTTGGAGCACATGGTCGATGTCGTTTTGAATTTTGATGGTGATAGAAACCAT
CTTTTCAGGCTATTGAGAGCCAATAAAAATCGTTTCGGATCAACTGCAGAAATCGGAATTTATGAAATGGTTTCTCAAGG
TTTAAAAGAAATAAAAAATCCTTCCGAAATTTTAATTACCAAAAAATTTGAAGAGCTTTCCGGAAATTCTGTAGCGGTAA
CTTTAGAAGGAAACCGACCTATGCTTCTTGAAATTCAGGCATTGGTAAGTACCGCAGTTTATGGAACTCCGCAAAGAAGC
TGTACAGGTTTTGATTCTAAAAGACTCAATATGTTGTTGGCTGTTCTTGAAAAAAGAGCAGGTTTTCAGTTAGGCGCAAA
AGATGTTTTCCTAAATATTACCGGAGGAATTAAGACTGATGATCCAGCTTTGGATTTAGCAGTTGTCGCTTCTATTCTTT
CCTCGAATGAAGACATTGCCATTTCTGAACACTTTTGTTTTGCAGGTGAGATTGGTTTGAGTGGAGAAATTCGTCCTGTA
GCACAGATTGAACAAAGAATTACCGAGGCAGAAAAATTAGGTTATGAGAAAATTTTTGTTTCTAATTTAAATAAACTTCC
AAAGAAAAAGTTTGGAATCAAAATAGAAGAAGTGAGTAAGGTTGAGGATTTTCATGAAAGATTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.492
  radA Streptococcus mitis NCTC 12261

47.629

100

0.492
  radA Streptococcus pneumoniae D39

47.414

100

0.49
  radA Streptococcus pneumoniae TIGR4

47.414

100

0.49
  radA Streptococcus pneumoniae R6

47.414

100

0.49
  radA Streptococcus pneumoniae Rx1

47.414

100

0.49
  radA Streptococcus mitis SK321

49.652

95.991

0.477

Multiple sequence alignment