Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI511_RS20290 Genome accession   NZ_CP173610
Coordinates   4517812..4519194 (+) Length   460 a.a.
NCBI ID   WP_205539380.1    Uniprot ID   -
Organism   Pectobacterium versatile strain M22b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4512812..4524194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI511_RS20270 (ACI511_20280) prfC 4513110..4514699 (-) 1590 WP_103972314.1 peptide chain release factor 3 -
  ACI511_RS20275 (ACI511_20285) - 4514993..4515907 (+) 915 WP_233957048.1 hypothetical protein -
  ACI511_RS20280 (ACI511_20290) - 4515962..4516660 (-) 699 WP_211044705.1 YtjB family periplasmic protein -
  ACI511_RS20285 (ACI511_20295) serB 4516817..4517794 (+) 978 WP_095701482.1 phosphoserine phosphatase -
  ACI511_RS20290 (ACI511_20300) radA 4517812..4519194 (+) 1383 WP_205539380.1 DNA repair protein RadA Machinery gene
  ACI511_RS20295 (ACI511_20305) nadR 4519313..4520566 (+) 1254 WP_103861510.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACI511_RS20300 (ACI511_20310) - 4520563..4521210 (-) 648 WP_405077878.1 5-formyltetrahydrofolate cyclo-ligase -
  ACI511_RS20310 (ACI511_20320) zapA 4521508..4521837 (-) 330 WP_010284667.1 cell division protein ZapA -
  ACI511_RS20315 (ACI511_20325) - 4522030..4522617 (+) 588 WP_103861511.1 YecA family protein -
  ACI511_RS20320 (ACI511_20330) pepP 4522692..4524017 (+) 1326 WP_116362619.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49582.18 Da        Isoelectric Point: 7.4463

>NTDB_id=1073142 ACI511_RS20290 WP_205539380.1 4517812..4519194(+) (radA) [Pectobacterium versatile strain M22b]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASAPVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1073142 ACI511_RS20290 WP_205539380.1 4517812..4519194(+) (radA) [Pectobacterium versatile strain M22b]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGTAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGCCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCTATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCGCACAGACTCAATCTGCCGACGCAGAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTAACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTTCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAAGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TAGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus mitis NCTC 12261

42.637

98.913

0.422
  radA Streptococcus mitis SK321

42.637

98.913

0.422
  radA Streptococcus pneumoniae Rx1

42.637

98.913

0.422
  radA Streptococcus pneumoniae D39

42.637

98.913

0.422
  radA Streptococcus pneumoniae R6

42.637

98.913

0.422
  radA Streptococcus pneumoniae TIGR4

42.637

98.913

0.422

Multiple sequence alignment