Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3MR_RS09580 Genome accession   NZ_CP173600
Coordinates   1805656..1806285 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98191     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800656..1811285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MR_RS09560 (ACI3MR_09560) ycbZ 1801057..1802817 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACI3MR_RS09565 (ACI3MR_09565) matP 1803003..1803455 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3MR_RS09570 (ACI3MR_09570) ompA 1803531..1804571 (-) 1041 WP_000750416.1 porin OmpA -
  ACI3MR_RS09575 (ACI3MR_09575) sulA 1804928..1805437 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3MR_RS09580 (ACI3MR_09580) sxy/tfoX 1805656..1806285 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3MR_RS09585 (ACI3MR_09585) yccS 1806248..1808410 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ACI3MR_RS09590 (ACI3MR_09590) yccF 1808420..1808866 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3MR_RS09595 (ACI3MR_09595) helD 1808989..1811043 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1073082 ACI3MR_RS09580 WP_000839153.1 1805656..1806285(+) (sxy/tfoX) [Escherichia coli strain 98191]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1073082 ACI3MR_RS09580 WP_000839153.1 1805656..1806285(+) (sxy/tfoX) [Escherichia coli strain 98191]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment