Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3ML_RS19335 Genome accession   NZ_CP173596
Coordinates   3708854..3709483 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98192     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3703854..3714483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ML_RS19315 (ACI3ML_19305) ycbZ 3704244..3706004 (-) 1761 WP_029701764.1 Lon protease family protein -
  ACI3ML_RS19320 (ACI3ML_19310) matP 3706190..3706642 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3ML_RS19325 (ACI3ML_19315) ompA 3706717..3707769 (-) 1053 WP_000750418.1 porin OmpA -
  ACI3ML_RS19330 (ACI3ML_19320) sulA 3708126..3708635 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3ML_RS19335 (ACI3ML_19325) sxy/tfoX 3708854..3709483 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3ML_RS19340 (ACI3ML_19330) yccS 3709446..3711608 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ACI3ML_RS19345 (ACI3ML_19335) yccF 3711618..3712064 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3ML_RS19350 (ACI3ML_19340) helD 3712187..3714241 (+) 2055 WP_106651909.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1073074 ACI3ML_RS19335 WP_000839153.1 3708854..3709483(+) (sxy/tfoX) [Escherichia coli strain 98192]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1073074 ACI3ML_RS19335 WP_000839153.1 3708854..3709483(+) (sxy/tfoX) [Escherichia coli strain 98192]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment