Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3M2_RS20160 Genome accession   NZ_CP173582
Coordinates   4098781..4099410 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98195     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4093781..4104410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M2_RS20145 (ACI3M2_20145) helD 4094023..4096077 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACI3M2_RS20150 (ACI3M2_20150) yccF 4096200..4096646 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3M2_RS20155 (ACI3M2_20155) yccS 4096656..4098818 (+) 2163 WP_000875058.1 YccS family putative transporter -
  ACI3M2_RS20160 (ACI3M2_20160) sxy/tfoX 4098781..4099410 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3M2_RS20165 (ACI3M2_20165) sulA 4099629..4100138 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3M2_RS20170 (ACI3M2_20170) ompA 4100495..4101535 (+) 1041 WP_000750416.1 porin OmpA -
  ACI3M2_RS20175 (ACI3M2_20175) matP 4101611..4102063 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3M2_RS20180 (ACI3M2_20180) ycbZ 4102249..4104009 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1073007 ACI3M2_RS20160 WP_000839153.1 4098781..4099410(-) (sxy/tfoX) [Escherichia coli strain 98195]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1073007 ACI3M2_RS20160 WP_000839153.1 4098781..4099410(-) (sxy/tfoX) [Escherichia coli strain 98195]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment