Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3M3_RS19525 Genome accession   NZ_CP173561
Coordinates   4015277..4015906 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98201     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4010277..4020906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M3_RS19505 (ACI3M3_19505) ycbZ 4010678..4012438 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACI3M3_RS19510 (ACI3M3_19510) matP 4012624..4013076 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3M3_RS19515 (ACI3M3_19515) ompA 4013152..4014192 (-) 1041 WP_000750416.1 porin OmpA -
  ACI3M3_RS19520 (ACI3M3_19520) sulA 4014549..4015058 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3M3_RS19525 (ACI3M3_19525) sxy/tfoX 4015277..4015906 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3M3_RS19530 (ACI3M3_19530) yccS 4015869..4018031 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ACI3M3_RS19535 (ACI3M3_19535) yccF 4018041..4018487 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3M3_RS19540 (ACI3M3_19540) helD 4018610..4020664 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072920 ACI3M3_RS19525 WP_000839153.1 4015277..4015906(+) (sxy/tfoX) [Escherichia coli strain 98201]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072920 ACI3M3_RS19525 WP_000839153.1 4015277..4015906(+) (sxy/tfoX) [Escherichia coli strain 98201]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment