Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AACH44_RS17810 Genome accession   NZ_AP028908
Coordinates   3933705..3935087 (+) Length   460 a.a.
NCBI ID   WP_261849280.1    Uniprot ID   A0AAN0KCG0
Organism   Pectobacterium araliae strain MAFF 302110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3928705..3940087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH44_RS17790 (PEC302110_34850) osmY 3928977..3929585 (-) 609 WP_261849283.1 molecular chaperone OsmY -
  AACH44_RS17795 (PEC302110_34860) prfC 3930102..3931691 (-) 1590 WP_261849282.1 peptide chain release factor 3 -
  AACH44_RS17800 (PEC302110_34870) - 3931870..3932553 (-) 684 WP_261849281.1 YtjB family periplasmic protein -
  AACH44_RS17805 (PEC302110_34880) serB 3932710..3933687 (+) 978 WP_137741481.1 phosphoserine phosphatase -
  AACH44_RS17810 (PEC302110_34890) radA 3933705..3935087 (+) 1383 WP_261849280.1 DNA repair protein RadA Machinery gene
  AACH44_RS17815 (PEC302110_34900) nadR 3935219..3936472 (+) 1254 WP_261849279.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  AACH44_RS17820 (PEC302110_34910) - 3936469..3937110 (-) 642 WP_261849278.1 5-formyltetrahydrofolate cyclo-ligase -
  AACH44_RS17830 (PEC302110_34920) zapA 3937409..3937738 (-) 330 WP_005971092.1 cell division protein ZapA -
  AACH44_RS17835 (PEC302110_34930) - 3937931..3938518 (+) 588 WP_261849277.1 YecA family protein -
  AACH44_RS17840 (PEC302110_34940) pepP 3938580..3939905 (+) 1326 WP_261849276.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49546.11 Da        Isoelectric Point: 7.4218

>NTDB_id=107288 AACH44_RS17810 WP_261849280.1 3933705..3935087(+) (radA) [Pectobacterium araliae strain MAFF 302110]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=107288 AACH44_RS17810 WP_261849280.1 3933705..3935087(+) (radA) [Pectobacterium araliae strain MAFF 302110]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCGGATTACCCACGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGTCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCGCTGCCTCGCTTTTCTACAGGC
TTTCAGGAGTTTGACCGTGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATCCTGATCGGCGGTAACCCCGGCGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTGTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTCACCGGCGAAGAATCCT
TGCAGCAGGTGGCAATGCGGGCACATCGCCTCAATCTGCCGACCCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAATTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAGTCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTTGCCAAAACGCGCGGCGTGG
CTATCGTCATGGTCGGCCACGTCACCAAAGATGGCTCACTCGCTGGGCCGAAAGTATTGGAACACTGCATCGATTGCTCC
GTGCTGCTGGACGGCGATGCCGATTCGCGTTTCCGCACGCTACGCAGCCATAAAAACCGTTTCGGTGCCGTCAATGAGTT
AGGCGTGTTCGCCATGACGGAACAAGGACTGCGTGAGATCAGCAACCCGTCAGCCATTTTCCTCAGTCGCGGAGATGAAG
TGACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACGCGCCCGCTGTTGGTGGAGATTCAGGCGCTGGTCGATCAA
TCGATGATGGCGAACCCGCGTCGCGTCGCGGTTGGGCTGGAGCAAAACCGACTGGCGATCCTGCTGGCGGTACTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTATTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCTG
ACCTGGCGCTGCTGCTCTCGCTGGTTTCCAGCTTCCGCGATCGCCCGCTGCCACAGGATCTGGTCATCTTCGGCGAAGTC
GGTCTGGCGGGCGAAATTCGCCCGGTTCCCAGCGGACAAGAGCGAATTGCCGAAGCTGCCAAACACGGTTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCGGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment