Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3ME_RS06975 Genome accession   NZ_CP173554
Coordinates   654838..655467 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98203     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 649838..660467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ME_RS06960 (ACI3ME_06975) helD 650080..652134 (-) 2055 WP_022645482.1 DNA helicase IV -
  ACI3ME_RS06965 (ACI3ME_06980) yccF 652257..652703 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3ME_RS06970 (ACI3ME_06985) yccS 652713..654875 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACI3ME_RS06975 (ACI3ME_06990) sxy/tfoX 654838..655467 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3ME_RS06980 (ACI3ME_06995) sulA 655686..656195 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ACI3ME_RS06985 (ACI3ME_07000) ompA 656552..657592 (+) 1041 WP_022645481.1 porin OmpA -
  ACI3ME_RS06990 (ACI3ME_07005) matP 657669..658121 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3ME_RS06995 (ACI3ME_07010) ycbZ 658307..660067 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072855 ACI3ME_RS06975 WP_000839153.1 654838..655467(-) (sxy/tfoX) [Escherichia coli strain 98203]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072855 ACI3ME_RS06975 WP_000839153.1 654838..655467(-) (sxy/tfoX) [Escherichia coli strain 98203]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment