Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3M5_RS06560 Genome accession   NZ_CP173544
Coordinates   822952..823581 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98206     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 817952..828581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M5_RS06540 (ACI3M5_06535) ycbZ 818341..820101 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACI3M5_RS06545 (ACI3M5_06540) matP 820287..820739 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3M5_RS06550 (ACI3M5_06545) ompA 820815..821867 (-) 1053 WP_001361736.1 porin OmpA -
  ACI3M5_RS06555 (ACI3M5_06550) sulA 822224..822733 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3M5_RS06560 (ACI3M5_06555) sxy/tfoX 822952..823581 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3M5_RS06565 (ACI3M5_06560) yccS 823544..825706 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ACI3M5_RS06570 (ACI3M5_06565) yccF 825716..826162 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3M5_RS06575 (ACI3M5_06570) helD 826285..828339 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072813 ACI3M5_RS06560 WP_000839153.1 822952..823581(+) (sxy/tfoX) [Escherichia coli strain 98206]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072813 ACI3M5_RS06560 WP_000839153.1 822952..823581(+) (sxy/tfoX) [Escherichia coli strain 98206]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment