Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3MH_RS14905 Genome accession   NZ_CP173533
Coordinates   3081194..3081823 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98208     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3076194..3086823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MH_RS14885 (ACI3MH_14895) ycbZ 3076583..3078343 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACI3MH_RS14890 (ACI3MH_14900) matP 3078529..3078981 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3MH_RS14895 (ACI3MH_14905) ompA 3079057..3080109 (-) 1053 WP_001361736.1 porin OmpA -
  ACI3MH_RS14900 (ACI3MH_14910) sulA 3080466..3080975 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3MH_RS14905 (ACI3MH_14915) sxy/tfoX 3081194..3081823 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3MH_RS14910 (ACI3MH_14920) yccS 3081786..3083948 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ACI3MH_RS14915 (ACI3MH_14925) yccF 3083958..3084404 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3MH_RS14920 (ACI3MH_14930) helD 3084527..3086581 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072783 ACI3MH_RS14905 WP_000839153.1 3081194..3081823(+) (sxy/tfoX) [Escherichia coli strain 98208]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072783 ACI3MH_RS14905 WP_000839153.1 3081194..3081823(+) (sxy/tfoX) [Escherichia coli strain 98208]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment