Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3MG_RS23435 Genome accession   NZ_CP173493
Coordinates   4811494..4812123 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98218     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4806494..4817123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MG_RS23415 (ACI3MG_23420) ycbZ 4806894..4808654 (-) 1761 WP_000156473.1 Lon protease family protein -
  ACI3MG_RS23420 (ACI3MG_23425) matP 4808840..4809292 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3MG_RS23425 (ACI3MG_23430) ompA 4809369..4810409 (-) 1041 WP_022645481.1 porin OmpA -
  ACI3MG_RS23430 (ACI3MG_23435) sulA 4810766..4811275 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ACI3MG_RS23435 (ACI3MG_23440) sxy/tfoX 4811494..4812123 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3MG_RS23440 (ACI3MG_23445) yccS 4812086..4814248 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ACI3MG_RS23445 (ACI3MG_23450) yccF 4814258..4814704 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3MG_RS23450 (ACI3MG_23455) helD 4814827..4816881 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072658 ACI3MG_RS23435 WP_000839153.1 4811494..4812123(+) (sxy/tfoX) [Escherichia coli strain 98218]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072658 ACI3MG_RS23435 WP_000839153.1 4811494..4812123(+) (sxy/tfoX) [Escherichia coli strain 98218]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment