Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3MU_RS07480 Genome accession   NZ_CP173484
Coordinates   1359130..1359759 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98221     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354130..1364759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MU_RS07460 (ACI3MU_07460) ycbZ 1354531..1356291 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACI3MU_RS07465 (ACI3MU_07465) matP 1356477..1356929 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3MU_RS07470 (ACI3MU_07470) ompA 1357005..1358045 (-) 1041 WP_000750416.1 porin OmpA -
  ACI3MU_RS07475 (ACI3MU_07475) sulA 1358402..1358911 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3MU_RS07480 (ACI3MU_07480) sxy/tfoX 1359130..1359759 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3MU_RS07485 (ACI3MU_07485) yccS 1359722..1361884 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ACI3MU_RS07490 (ACI3MU_07490) yccF 1361894..1362340 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3MU_RS07495 (ACI3MU_07495) helD 1362463..1364517 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072595 ACI3MU_RS07480 WP_000839153.1 1359130..1359759(+) (sxy/tfoX) [Escherichia coli strain 98221]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072595 ACI3MU_RS07480 WP_000839153.1 1359130..1359759(+) (sxy/tfoX) [Escherichia coli strain 98221]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment