Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI3M4_RS20225 Genome accession   NZ_CP173466
Coordinates   4206254..4206883 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 98227     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4201254..4211883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M4_RS20205 (ACI3M4_20205) ycbZ 4201655..4203415 (-) 1761 WP_000152888.1 Lon protease family protein -
  ACI3M4_RS20210 (ACI3M4_20210) matP 4203601..4204053 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI3M4_RS20215 (ACI3M4_20215) ompA 4204129..4205169 (-) 1041 WP_000750416.1 porin OmpA -
  ACI3M4_RS20220 (ACI3M4_20220) sulA 4205526..4206035 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI3M4_RS20225 (ACI3M4_20225) sxy/tfoX 4206254..4206883 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI3M4_RS20230 (ACI3M4_20230) yccS 4206846..4209008 (-) 2163 WP_000875058.1 YccS family putative transporter -
  ACI3M4_RS20235 (ACI3M4_20235) yccF 4209018..4209464 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI3M4_RS20240 (ACI3M4_20240) helD 4209587..4211641 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1072526 ACI3M4_RS20225 WP_000839153.1 4206254..4206883(+) (sxy/tfoX) [Escherichia coli strain 98227]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1072526 ACI3M4_RS20225 WP_000839153.1 4206254..4206883(+) (sxy/tfoX) [Escherichia coli strain 98227]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment