Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACI5EZ_RS16870 Genome accession   NZ_CP173428
Coordinates   3501694..3502335 (-) Length   213 a.a.
NCBI ID   WP_031958555.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAB_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496694..3507335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5EZ_RS16850 aroK 3497610..3498179 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACI5EZ_RS16855 pilQ 3498191..3500356 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACI5EZ_RS16860 pilP 3500419..3500946 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACI5EZ_RS16865 pilO 3500957..3501697 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACI5EZ_RS16870 pilN 3501694..3502335 (-) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  ACI5EZ_RS16875 pilM 3502335..3503393 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  ACI5EZ_RS16880 ponA 3503554..3506109 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  ACI5EZ_RS16885 - 3506127..3506951 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  ACI5EZ_RS16890 - 3506954..3507286 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24047.41 Da        Isoelectric Point: 5.4028

>NTDB_id=1072319 ACI5EZ_RS16870 WP_031958555.1 3501694..3502335(-) (pilN) [Acinetobacter baumannii strain CRAB_1]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLAEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1072319 ACI5EZ_RS16870 WP_031958555.1 3501694..3502335(-) (pilN) [Acinetobacter baumannii strain CRAB_1]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGCGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment