Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ACI5EZ_RS16750 Genome accession   NZ_CP173428
Coordinates   3475168..3475641 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAB_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470168..3480641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5EZ_RS16735 pilX 3472797..3473615 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACI5EZ_RS16740 pilW 3473612..3474613 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  ACI5EZ_RS16745 pilV 3474614..3475174 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACI5EZ_RS16750 fimU 3475168..3475641 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACI5EZ_RS16755 ispH 3475811..3476761 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACI5EZ_RS16760 gmk 3476884..3477513 (+) 630 WP_000015936.1 guanylate kinase -
  ACI5EZ_RS16765 rpoZ 3477586..3477864 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACI5EZ_RS16770 - 3477903..3478033 (+) 131 Protein_3271 hypothetical protein -
  ACI5EZ_RS16775 - 3478073..3480178 (+) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=1072314 ACI5EZ_RS16750 WP_001214068.1 3475168..3475641(-) (fimU) [Acinetobacter baumannii strain CRAB_1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1072314 ACI5EZ_RS16750 WP_001214068.1 3475168..3475641(-) (fimU) [Acinetobacter baumannii strain CRAB_1]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment