Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACI5EZ_RS00855 Genome accession   NZ_CP173428
Coordinates   172592..173746 (-) Length   384 a.a.
NCBI ID   WP_020752706.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAB_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167592..178746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5EZ_RS00835 - 168753..169403 (+) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -
  ACI5EZ_RS00840 - 169509..170429 (+) 921 WP_000084546.1 DMT family transporter -
  ACI5EZ_RS00845 - 170821..171390 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ACI5EZ_RS00850 dprA 171441..172571 (-) 1131 WP_031945334.1 DNA-processing protein DprA Machinery gene
  ACI5EZ_RS00855 tsaP 172592..173746 (-) 1155 WP_020752706.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACI5EZ_RS00860 def 173869..174399 (+) 531 WP_001196539.1 peptide deformylase -
  ACI5EZ_RS00865 - 174436..174864 (+) 429 WP_000231986.1 DUF2946 family protein -
  ACI5EZ_RS00870 - 174936..177050 (+) 2115 WP_031958651.1 TonB-dependent copper receptor -
  ACI5EZ_RS00875 - 177104..177310 (+) 207 WP_000182542.1 hypothetical protein -
  ACI5EZ_RS00880 - 177380..178594 (-) 1215 WP_031958648.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42339.29 Da        Isoelectric Point: 8.5816

>NTDB_id=1072280 ACI5EZ_RS00855 WP_020752706.1 172592..173746(-) (tsaP) [Acinetobacter baumannii strain CRAB_1]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
SSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMLEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1072280 ACI5EZ_RS00855 WP_020752706.1 172592..173746(-) (tsaP) [Acinetobacter baumannii strain CRAB_1]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AGCAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCTTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAAGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99

Multiple sequence alignment