Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACI48J_RS08085 Genome accession   NZ_CP173427
Coordinates   1767700..1768149 (+) Length   149 a.a.
NCBI ID   WP_405082407.1    Uniprot ID   -
Organism   Paenibacillus chitinolyticus strain KFRI-Sea08-06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1762700..1773149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI48J_RS08060 (ACI48J_08060) - 1763067..1763510 (+) 444 WP_405082402.1 NUDIX hydrolase -
  ACI48J_RS08065 (ACI48J_08065) deoC 1763507..1764184 (+) 678 WP_405082403.1 deoxyribose-phosphate aldolase -
  ACI48J_RS08070 (ACI48J_08070) - 1764150..1765496 (-) 1347 WP_405082404.1 Na/Pi cotransporter family protein -
  ACI48J_RS08075 (ACI48J_08075) - 1765579..1766943 (+) 1365 WP_405082405.1 class I SAM-dependent rRNA methyltransferase -
  ACI48J_RS08080 (ACI48J_08080) - 1767044..1767577 (+) 534 WP_405082406.1 DinB family protein -
  ACI48J_RS08085 (ACI48J_08085) nucA/comI 1767700..1768149 (+) 450 WP_405082407.1 sporulation protein Machinery gene
  ACI48J_RS08090 (ACI48J_08090) - 1768206..1768481 (+) 276 WP_405082408.1 hypothetical protein -
  ACI48J_RS08095 (ACI48J_08095) - 1768548..1768901 (-) 354 WP_326057206.1 hypothetical protein -
  ACI48J_RS08100 (ACI48J_08100) - 1769026..1769949 (+) 924 WP_405082409.1 AEC family transporter -
  ACI48J_RS08105 (ACI48J_08105) - 1770192..1770626 (+) 435 WP_326057204.1 GNAT family N-acetyltransferase -
  ACI48J_RS08110 (ACI48J_08110) - 1770842..1771060 (+) 219 WP_326057201.1 spore germination protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16219.63 Da        Isoelectric Point: 10.1240

>NTDB_id=1072256 ACI48J_RS08085 WP_405082407.1 1767700..1768149(+) (nucA/comI) [Paenibacillus chitinolyticus strain KFRI-Sea08-06]
MTQTRKKNKKTVSIFLFLLIVLVSVIAKNTGLFDGGTGKSTSVDRTIYFPSDKYPETAKHIKDAVAKGASPVCTIDRKGA
EENRRQSLAGVATKKNYDRDEWPMAMCAEGGKGADIAYIKPADNRGAGSWIGNQLDKLPDGTRVEIVVK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1072256 ACI48J_RS08085 WP_405082407.1 1767700..1768149(+) (nucA/comI) [Paenibacillus chitinolyticus strain KFRI-Sea08-06]
ATGACCCAAACACGAAAAAAGAACAAAAAAACGGTCTCGATTTTTCTTTTTCTGCTGATTGTTCTCGTCTCGGTCATCGC
CAAAAACACCGGTTTGTTCGACGGCGGGACGGGCAAGAGCACTTCTGTAGACCGGACAATCTATTTCCCGAGCGACAAGT
ATCCCGAAACCGCCAAGCACATCAAAGACGCGGTGGCAAAAGGAGCTTCGCCCGTCTGCACGATCGACCGGAAGGGAGCC
GAAGAGAACCGCAGGCAGTCCCTGGCCGGTGTCGCGACCAAAAAAAATTACGACCGCGACGAATGGCCGATGGCCATGTG
TGCCGAAGGCGGCAAGGGAGCGGATATCGCTTACATCAAACCCGCGGACAACCGGGGGGCCGGATCGTGGATCGGCAATC
AGCTAGATAAACTTCCCGATGGAACGCGGGTCGAGATCGTGGTAAAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(55-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.931

77.852

0.49

Multiple sequence alignment