Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI48J_RS02305 Genome accession   NZ_CP173427
Coordinates   492545..493495 (+) Length   316 a.a.
NCBI ID   WP_326052020.1    Uniprot ID   -
Organism   Paenibacillus chitinolyticus strain KFRI-Sea08-06     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487545..498495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI48J_RS02295 (ACI48J_02295) - 488915..491638 (+) 2724 WP_405081445.1 alpha-mannosidase -
  ACI48J_RS02300 (ACI48J_02300) - 491772..492332 (-) 561 WP_405081446.1 cupin domain-containing protein -
  ACI48J_RS02305 (ACI48J_02305) ceuB 492545..493495 (+) 951 WP_326052020.1 ABC transporter permease Machinery gene
  ACI48J_RS02310 (ACI48J_02310) - 493492..494445 (+) 954 WP_405081447.1 iron chelate uptake ABC transporter family permease subunit -
  ACI48J_RS02315 (ACI48J_02315) - 494439..495197 (+) 759 WP_405081448.1 ABC transporter ATP-binding protein -
  ACI48J_RS02320 (ACI48J_02320) - 495313..496278 (+) 966 WP_405081449.1 siderophore ABC transporter substrate-binding protein -
  ACI48J_RS02325 (ACI48J_02325) - 496835..497800 (+) 966 WP_405081450.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34848.33 Da        Isoelectric Point: 10.2977

>NTDB_id=1072250 ACI48J_RS02305 WP_326052020.1 492545..493495(+) (ceuB) [Paenibacillus chitinolyticus strain KFRI-Sea08-06]
MKKRYLVIALIVLSVASIFIGVKDISPLDLFNLSDDKVHILLVSRLPRLISILIAGMSMSVIGLIMQQLSRNKFVSPTTA
GTMDSARFGILVSMMLFTSAGPLEKMLIAFVFALLGTFIFMKILDRVKYKDTIFIPLVGLMFGNIVSSITTFFAYKNNLI
QNMSSWLQGDFSMIMKGRYEIMYISIPVLVIAYLFANRFTIAGMGEEFSTNLGLKYKQVVNIGLVIVALVSSVVILTVGT
LPFLGLIIPNIVTLYMGDNLKKALPHTALLGAVFVLFCDILGRVIIFPYEVSIGLTVGVIGSGIFLYMLLARRKAL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1072250 ACI48J_RS02305 WP_326052020.1 492545..493495(+) (ceuB) [Paenibacillus chitinolyticus strain KFRI-Sea08-06]
ATGAAAAAGAGATATCTGGTGATCGCGCTTATCGTTTTATCCGTCGCATCGATCTTTATCGGGGTGAAAGATATCAGCCC
GTTGGATCTGTTCAACTTGAGCGACGATAAAGTCCATATCCTGCTAGTCAGCAGACTTCCCCGGTTAATCAGCATCTTGA
TCGCAGGCATGAGCATGAGTGTCATCGGCCTGATCATGCAGCAGCTGAGCCGCAATAAGTTCGTGTCGCCGACTACGGCC
GGTACGATGGATTCCGCCCGGTTCGGCATTCTGGTCTCGATGATGCTGTTCACCTCGGCCGGTCCGCTGGAGAAAATGCT
GATCGCTTTCGTATTCGCCCTGCTGGGAACTTTCATCTTTATGAAAATTCTCGACCGTGTGAAATACAAGGACACGATTT
TTATCCCGCTGGTGGGTCTGATGTTCGGAAACATCGTAAGCTCTATCACTACCTTTTTCGCTTATAAAAACAATCTCATT
CAGAACATGTCCTCGTGGCTGCAGGGAGATTTCTCGATGATAATGAAGGGCCGGTACGAAATCATGTACATTTCGATCCC
GGTGCTCGTTATCGCGTATCTGTTCGCCAACCGTTTTACCATTGCCGGCATGGGGGAGGAGTTTTCCACCAACCTGGGGC
TGAAATACAAGCAGGTGGTTAACATCGGGCTCGTCATCGTGGCTCTCGTATCCTCCGTGGTCATTCTGACGGTCGGTACG
CTGCCGTTCCTGGGGCTGATTATCCCGAACATCGTCACGCTCTACATGGGAGACAATCTGAAAAAGGCGCTGCCCCACAC
CGCCCTGCTCGGAGCCGTGTTCGTCCTTTTCTGCGACATTCTGGGACGGGTTATCATTTTCCCGTATGAGGTTTCAATCG
GGCTTACGGTCGGGGTAATCGGAAGCGGCATCTTCCTTTACATGCTGCTGGCAAGGAGAAAGGCCTTATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.226

98.101

0.522

Multiple sequence alignment