Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACI2O8_RS12575 Genome accession   NZ_CP173415
Coordinates   2431247..2432050 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426247..2437050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS12550 (ACI2O8_12550) glpQB 2427385..2428116 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ACI2O8_RS12555 (ACI2O8_12555) yqiI 2428195..2428815 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  ACI2O8_RS12560 (ACI2O8_12560) - 2428835..2429131 (-) 297 WP_014480225.1 hypothetical protein -
  ACI2O8_RS12565 (ACI2O8_12565) - 2429439..2429591 (+) 153 WP_014480226.1 hypothetical protein -
  ACI2O8_RS12570 (ACI2O8_12570) yqiG 2429664..2430782 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  ACI2O8_RS12575 (ACI2O8_12575) spo0A 2431247..2432050 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACI2O8_RS12580 (ACI2O8_12580) spoIVB 2432326..2433606 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ACI2O8_RS12585 (ACI2O8_12585) recN 2433780..2435510 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  ACI2O8_RS12590 (ACI2O8_12590) argR 2435547..2435996 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ACI2O8_RS12595 (ACI2O8_12595) yqxC 2436094..2436939 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1072100 ACI2O8_RS12575 WP_003226427.1 2431247..2432050(-) (spo0A) [Bacillus subtilis strain FJYA24]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1072100 ACI2O8_RS12575 WP_003226427.1 2431247..2432050(-) (spo0A) [Bacillus subtilis strain FJYA24]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment